View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_35 (Length: 418)
Name: NF9261_low_35
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_35 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 30235327 - 30234907
Alignment:
| Q |
1 |
caatcaaataccagcaatgaatcgattagacaaaacggtacaaaggtaacaatgtagcaaactaacaaaaagacaggtggtataatgannnnnnncttgt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30235327 |
caatcaaataccagcaatgaatcaattagacaaaacggtacaaaggtaacaatgtagcaaactaacaaaaagacaggtggtataatgatatttttcttgt |
30235228 |
T |
|
| Q |
101 |
gaaaaaataacacccaagcattaccaaattgtaacaaaaaccaaaaggcactgaagcaagtgtattaatttaatattacacttcagttacaaaagaccta |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30235227 |
gaaaaaataacacccaagcattaccacattgtaacaaaaaccaaaaggcacggaagcaagtgtattaatttaatattacacttcagttacaaaagaccta |
30235128 |
T |
|
| Q |
201 |
aacatattgtcacgagcattaggtcccaa-gtataagcagtatttacta--gagatatcagacaaatgaacaaatgattcctttcatttctcccttagga |
297 |
Q |
| |
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||||||||| || |||||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30235127 |
aacatattggcatgagcattaggtcccaaagtataaacagtatttaatacagagatatcagacaaatgaacaaatgatacctttcatttctcccttagga |
30235028 |
T |
|
| Q |
298 |
ttcacaataacaccagcattatctgcaaaaaccaacaccacgtattaacaagagtacaccagcaaaagcatataattaaaattgagagcaccacaaatta |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30235027 |
ttcacaataacaccagcattatctgcaaaaaccaacaccacatattaacaagagtacaccagcaaaagcatataattaaaattgagagcgccacaaatta |
30234928 |
T |
|
| Q |
398 |
acaagcataagttatgttgac |
418 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
30234927 |
acaagaataagttatgttgac |
30234907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 8425362 - 8425318
Alignment:
| Q |
277 |
cctttcatttctcccttaggattcacaataacaccagcattatct |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425362 |
cctttcatttctcccttaggattcacaataacaccagcattatct |
8425318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 25154083 - 25153692
Alignment:
| Q |
2 |
aatcaaataccagcaatgaatcgattagacaaaacggtacaaaggtaacaatgtagcaaactaacaaaaagacaggtggtat-----aatgannnnnnnc |
96 |
Q |
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||||||||| || ||||||||| |||||||||||| || |||||||| |||||||| ||||||||||||||||||||||| | |||| | |
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| T |
25154083 |
aatcaaatatcaacaatgaatcaattagacaaaacagtccaaaggta-caatgtagaaaactaacaaaaagacaggtggtgtggtgtaatg-tttttttc |
25153986 |
T |
|
| Q |
97 |
ttgtgaaaaaataacacccaagcattaccaaattgtaacaaaaaccaaaaggcactgaagcaagtgtattaatttaatattacacttcagtt------ac |
190 |
Q |
| |
|
|||||||||||| |||| |||||| |||| ||| |||||| | |||||||||||||||| |||||||||| |||||||| |||||||| || || |
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| T |
25153985 |
ttgtgaaaaaattacacagaagcataaccacattataacaatagccaaaaggcactgaagaaagtgtattagtttaatatgacacttcaatttcaattac |
25153886 |
T |
|
| Q |
191 |
aaaagacctaaacatattgtcacgagcattaggtcccaagtata--agcagtatttacta--gagatatcagacaaatgaacaaatgattcctttcattt |
286 |
Q |
| |
|
|||||| ||||||| ||| || ||||||||||| ||||||||| | | | ||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
25153885 |
aaaagatctaaacacatttgcatgagcattaggttccaagtatataatctgagtttactactgagatatcagataaatgaacaaatgataactttcattt |
25153786 |
T |
|
| Q |
287 |
ctcccttaggattcacaataacaccagcattatctgcaaaaaccaacaccacgtattaacaagagtacaccagcaaaagcatataattaaaatt |
380 |
Q |
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||||||||||||| ||||||||||||| |||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||| |
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| T |
25153785 |
ctcccttaggattaacaataacaccagaattatctgcataaaccaacatcacatattaacaagagtacaacagcaaaagcatataattagaatt |
25153692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 5690226 - 5690287
Alignment:
| Q |
323 |
caaaaaccaacaccacgtattaacaagagtacaccagcaaaagcatataattaaaattgaga |
384 |
Q |
| |
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|||||||||||| ||| |||||||||||| ||| || |||||||||||||||| |||||||| |
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| T |
5690226 |
caaaaaccaacatcacatattaacaagagcacaacaacaaaagcatataattagaattgaga |
5690287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 2 - 418
Target Start/End: Complemental strand, 29759007 - 29758599
Alignment:
| Q |
2 |
aatcaaataccagcaatgaatcgattagacaaaacggtacaaaggtaaca--atgtagcaaactaacaaaaagacaggtggtataatgannnnnnncttg |
99 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| || |||||||| | || ||||||||||||||||||||||||||||| | |||| |
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| T |
29759007 |
aatcaaataccagcaatgaatcaattagacaaaacagtcaaaaggtaaaataatttagcaaactaacaaaaagacaggtggtatgtt----tttttcttg |
29758912 |
T |
|
| Q |
100 |
tgaaaaaataacacccaagcattaccaaattgtaacaaaaaccaaaaggcactgaagcaagtgtattaatttaatattacacttcagtt------acaaa |
193 |
Q |
| |
|
||||||||| | |||| |||| ||| |||||| | |||||||||| ||||| ||||||| ||||||||||| |||||||| || ||||| |
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| T |
29758911 |
tgaaaaaatta-------gcataaccacattataacaatagccaaaaggcaatgaagaaagtgtactaatttaatatgacacttcaatttcaattacaaa |
29758819 |
T |
|
| Q |
194 |
agacctaaacatattgtcacgagcattaggtcccaagtata--agcagtatttactagagatatcagacaaatgaacaaatgattcctttcatttctccc |
291 |
Q |
| |
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||| ||||||||||| || ||||||||||||||||||||| | | | ||||||| |||| ||||||||||||||| ||||||||||||||| |
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| T |
29758818 |
agatctaaacatatttgcatgagcattaggtcccaagtatataatctgagtttacta-------cagaaaaatgaacaaatgatacctttcatttctccc |
29758726 |
T |
|
| Q |
292 |
ttaggattcacaataacaccagcattatctgcaaaaaccaacaccacgtattaacaagagtacaccagcaaaagcatataattaaaattgagagcaccac |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||| | ||| ||| ||||| |
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| T |
29758725 |
ttaggattcacaataacaccagcattatctgcaaaaaccaacatcacatattaacaagagtacaacaacaaaagcatataattagatttgtgagtaccac |
29758626 |
T |
|
| Q |
392 |
aaattaacaagcataagttatgttgac |
418 |
Q |
| |
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| ||| |||| |||||| |||||||| |
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| T |
29758625 |
agattcacaataataagtaatgttgac |
29758599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 22476005 - 22476049
Alignment:
| Q |
277 |
cctttcatttctcccttaggattcacaataacaccagcattatct |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
22476005 |
cctttcatttctcccttaggattcacaataacgccggcattatct |
22476049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 321
Target Start/End: Complemental strand, 26849175 - 26849136
Alignment:
| Q |
282 |
catttctcccttaggattcacaataacaccagcattatct |
321 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||| |
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| T |
26849175 |
catttctcccttaggattcacaataacgccggcattatct |
26849136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 39327669 - 39327716
Alignment:
| Q |
277 |
cctttcatttctcccttaggattcacaataacaccagcattatctgca |
324 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||||||||||||| |
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|
| T |
39327669 |
cctttcatttctcctttgggattaacaataacaccagcattatctgca |
39327716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 39718782 - 39718829
Alignment:
| Q |
277 |
cctttcatttctcccttaggattcacaataacaccagcattatctgca |
324 |
Q |
| |
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||||| |||||||| || ||||| |||||||||||||||||||||||| |
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|
| T |
39718782 |
ccttttatttctcctttgggattaacaataacaccagcattatctgca |
39718829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 307
Target Start/End: Complemental strand, 1530708 - 1530679
Alignment:
| Q |
278 |
ctttcatttctcccttaggattcacaataa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
1530708 |
ctttcatttctcccttaggattcacaataa |
1530679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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