View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_low_38 (Length: 383)

Name: NF9261_low_38
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_low_38
NF9261_low_38
[»] chr3 (1 HSPs)
chr3 (19-317)||(39006035-39006333)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 39006035 - 39006333
Alignment:
Q  19 atctcgacgagggtgttaagaggattgttgaaacgattgatgggttggatgttggggttttgattaacaacgttgggatttcgtatccttatgcgagatt 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39006035 atctcgacgacggtgttaagaggattgttgaaacgattgatgggttggatgttggggttttgattaacaacgtggggatttcgtatccttatgcgagatt 39006134  T
Q  119 tttccatgaagttgatcaagagcttttgaagaatttgattaaggttaatgttgttggaactactaaggttactcaagctgttttgcctgggatgttgaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39006135 tttccatgaagttgatcaagagcttttgaagaatttgattaaggttaatgttgttggaactactaaggttactcaagctgttttgcctgggatgttgaag 39006234  T
Q  219 aggaaaaagggtgctattgttaatattggttctggtgctgctattgttattccttctgatcctctttatgctgtttatgctgctacaaaagcgtgagct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39006235 aggaaaaagggtgctattgttaatattggttctggtgctgctattgttattccttctgatcctctttatgctgtttatgctgctacaaaagcgtgagct 39006333  T

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