View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_41 (Length: 345)
Name: NF9261_low_41
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 27 - 326
Target Start/End: Complemental strand, 7138623 - 7138324
Alignment:
| Q |
27 |
aagtttcttattaggtttataacataggctcattaactaacatcataaatatttaaagacgaagagacttcagacaaatatcttcaaacaaagcatcact |
126 |
Q |
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| T |
7138623 |
aagtttcttattaggtttataacataggctcattaacaaacatcataaatatttaaagacgaagagacttcagacaaatatcttcaaagagagcatcact |
7138524 |
T |
|
| Q |
127 |
tgatgcatccgtgaagctgatgattcatttaagattgtctttttcatcaacttctgctctaaccatctctactagcagagaaaaacaaattgacgagaaa |
226 |
Q |
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| T |
7138523 |
tgatgcatccgtgaagctgatgattcatttaagatcgtctttttcatcaacttctgctctaaccatctctactagcagagaaaaacaaattgacgagaaa |
7138424 |
T |
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| Q |
227 |
tgaaactaacaataaaaacacgaagaaatactgaaatgaagaatgagatgaacgtaaaagccatagcctagaagaagagtaatattcgaaattaggcacc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7138423 |
tgaaactaacaataaaaacacgaagaaatactgaaatgaagaatgagatgaacgtaaaagccatagcctagaagaagagtaatattcgaaattaggcacc |
7138324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 8677262 - 8677138
Alignment:
| Q |
27 |
aagtttcttattaggtttataacataggctcattaactaacatcataaatatttaaagacgaagagacttcagacaaatatcttcaaacaaagcatcact |
126 |
Q |
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||||||||||||| ||||||||||||| |||| || |||||| |||||||||||||||| | | |||||||||||| |||||| |||||||||||| | |
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| T |
8677262 |
aagtttcttattaattttataacataggttcatgaagcaacatcttaaatatttaaagacgtacaaacttcagacaaaaatcttcgaacaaagcatcatt |
8677163 |
T |
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| Q |
127 |
tgatgcatccgtgaagctgatgatt |
151 |
Q |
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|||||||||||| |||||||||||| |
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| T |
8677162 |
tgatgcatccgtaaagctgatgatt |
8677138 |
T |
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