View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9261_low_43 (Length: 340)
Name: NF9261_low_43
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_43 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 49754883 - 49755205
Alignment:
| Q |
18 |
ccttcactaatggttttcttcactttgaaagatttgaaagtagggaacataatgcaaatttattttcctaagagagacccatcaacttcccctaagttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49754883 |
ccttcactaatggttttcttcactttgaaagatttgaaagtagggaacataatgcaaatttattttcctaagagagacccatcaacttcccctaagttat |
49754982 |
T |
|
| Q |
118 |
ggtccaaagaaaaagctgaatcacttcctttttcatcaaaccaactctcatatcttctcaaattcttctctttctctcaagattcacctcaagcaatggc |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49754983 |
ggtccaaacaaaaagctgaatcacttcctttttcatcaaaccaactctcatatcttctcaaattcttctctttctctcaagattcacctcaagcaatggc |
49755082 |
T |
|
| Q |
218 |
catgaaaaacactttaagagaatgtgagagtaaacccatcaaaggagaggtaaagttatgtgctacctcttttgaatctatgcttgaatttacacaaaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49755083 |
catgaaaaacactttaagagaatgtgagagtaaacccatcaaaggagaggtaaagttatgtgctacctcttttgaatctatgcttgaatttacacaaaac |
49755182 |
T |
|
| Q |
318 |
gttcttggttcaaaatatgaaat |
340 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49755183 |
gttcttggttcaaaatatgaaat |
49755205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 54449391 - 54449080
Alignment:
| Q |
18 |
ccttcactaatggttttcttcactttgaaagatttgaaagtagggaacataatgcaaatttattttcctaagagagacccatcaacttcccctaagttat |
117 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54449391 |
ccttcactaatggtattcttcactttaaaagatttgaaagtaggaaaaataatgcaaatttattttcctaagagagacccatcaacttcccctaagttat |
54449292 |
T |
|
| Q |
118 |
ggtccaaagaaaaagctgaatcacttcctttttcatcaaaccaactctcatatcttctcaaattcttctctttctctcaagattcacctcaagcaatggc |
217 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| || || |
|
|
| T |
54449291 |
ggcccaaagaagaagctgaatcacttcctttctcatcaaaccaactctcatatcttctaaaattcttctctttctctcgaggttcacctcaaggcatagc |
54449192 |
T |
|
| Q |
218 |
catgaaaaacactttaagagaatgtgagagtaaacccatcaaaggagaggtaaagttatgtgctacctcttttgaatctatgcttgaatttacacaaaac |
317 |
Q |
| |
|
||| ||| ||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54449191 |
aatggaaagcaccttaaaagaatgtgaaagcaaacccatcaaaggagaggttaagttttgtgctacctctttagaatctatgcttgaatttacacaaaac |
54449092 |
T |
|
| Q |
318 |
gttcttggttca |
329 |
Q |
| |
|
||||||||||| |
|
|
| T |
54449091 |
attcttggttca |
54449080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 27 - 304
Target Start/End: Original strand, 26208162 - 26208439
Alignment:
| Q |
27 |
atggttttcttcactttgaaagatttgaaagtagggaacataatgcaaatttattttcctaagagagacccatcaacttcccctaagttatggtccaaag |
126 |
Q |
| |
|
||||| |||||||| || ||||| || ||||| ||||| | |||||||||| ||||||| || ||| |||| ||||||||||||||||| ||| | | || |
|
|
| T |
26208162 |
atggtgttcttcaccttaaaagacttaaaagttgggaaaagaatgcaaattaattttcccaaaagaaacccttcaacttcccctaagttttggccaagag |
26208261 |
T |
|
| Q |
127 |
aaaaagctgaatcacttcctttttcatcaaaccaactctcatatcttctcaaattcttctctttctctcaagattcacctcaagcaatggccatgaaaaa |
226 |
Q |
| |
|
| |||||||| |||||||||||||||| ||| |||| || |||||||||| |||||||||| |||||||| || || ||||| | || ||| | | |
|
|
| T |
26208262 |
acaaagctgattcacttcctttttcattgaacaaacttccaactcttctcaaaatcttctctttatctcaagactctccacaagccaaagcaatggtaga |
26208361 |
T |
|
| Q |
227 |
cactttaagagaatgtgagagtaaacccatcaaaggagaggtaaagttatgtgctacctcttttgaatctatgcttga |
304 |
Q |
| |
|
|| | | |||||||||||| ||||||||||||||||| || || || ||||| || ||||| |||||||||||||| |
|
|
| T |
26208362 |
tacccttacagaatgtgagagcaaacccatcaaaggagaagtgaaattctgtgccacttctttagaatctatgcttga |
26208439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University