View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_44 (Length: 323)
Name: NF9261_low_44
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 37219215 - 37218927
Alignment:
| Q |
18 |
agaacacaacattctttcttatgaagtttacttgattttaccatttgctaagaacacattccatctcttagattcctaacttaggaagtcagatacatgg |
117 |
Q |
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| T |
37219215 |
agaacacaacattctttcttatgaagtttacttgattttaccatttgctaagaacacattccatctcttagattcctaacttaggaagtcagatacatgg |
37219116 |
T |
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| Q |
118 |
ttaatcgagtttgtatttaacgaaccattatatacacataggatcaaagcaaagctatcactactagtaataatgcaactcacaaaataagacacttaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37219115 |
ttaatcgagtttgtatttaacgaaccattatatacacataggatcaaagcaaagctatcactactagtaataatgcaactcacaaaataagacacttaga |
37219016 |
T |
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| Q |
218 |
aatgacttcctctctcaagatgatttcaaaacatcagtaatccacttctcttataataagttgtacaacaaccaatgcatagtagtata |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37219015 |
aatgacttcctctctcaagatgatttcaaaacatcagtaatccacttctcttataataagttgtacaacaaccaatgcatagtagtata |
37218927 |
T |
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