View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_45 (Length: 320)
Name: NF9261_low_45
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 54202380 - 54202656
Alignment:
| Q |
1 |
tcaactttcaacatcaataattattatcttgttacaagtatgaat---gttcacgccgtagacaacatcaaacacttcttagttttttcttttaaaatat |
97 |
Q |
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| T |
54202380 |
tcaactttcaacacaaataattaatatct-gttacaagtatgaataatgttcacgccgtagacaacatcaaacacttcttagttttttcttttaaaatat |
54202478 |
T |
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| Q |
98 |
gtgcatattcttttaagctaagattaatccacacatccaattttagcaaagcacaaggcattaacccacacatccaaggcatgctctaggattcaagtac |
197 |
Q |
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| T |
54202479 |
gtgcatattcttttaagctaagattaatccacacatccaattttagcaaagtacaaggcattaacccacacatccaaggcatgctctaggattcaagtac |
54202578 |
T |
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| Q |
198 |
tattgaacaatgtcacaatccatgctatttgatttgtacttcagcccgttccaaggg-acctttttacttcttcaatc |
274 |
Q |
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| T |
54202579 |
tattgaacaatgtcgcaatccatgctattttatttgtacttcagcccgttccaagggaacctttttacttcttcaatc |
54202656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 54202674 - 54202712
Alignment:
| Q |
272 |
atctttgtttttaaacagcttatcatttcttgatgtcca |
310 |
Q |
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| T |
54202674 |
atctttgtttttaaacagcttatcatttcttgatttcca |
54202712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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