View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_low_53 (Length: 292)

Name: NF9261_low_53
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_low_53
NF9261_low_53
[»] chr6 (12 HSPs)
chr6 (125-292)||(34867939-34868106)
chr6 (1-127)||(34868128-34868254)
chr6 (26-85)||(10031557-10031616)
chr6 (23-85)||(4859126-4859188)
chr6 (32-85)||(19369810-19369863)
chr6 (25-86)||(31430266-31430327)
chr6 (25-81)||(15443681-15443737)
chr6 (34-85)||(5579649-5579700)
chr6 (46-85)||(6751895-6751934)
chr6 (18-83)||(9024191-9024256)
chr6 (23-83)||(12627831-12627891)
chr6 (31-83)||(31115477-31115529)
[»] scaffold0024 (1 HSPs)
scaffold0024 (26-82)||(18124-18180)
[»] chr1 (8 HSPs)
chr1 (26-96)||(14332396-14332465)
chr1 (35-84)||(18946048-18946097)
chr1 (26-84)||(17080895-17080951)
chr1 (32-86)||(40176596-40176650)
chr1 (45-86)||(34184674-34184715)
chr1 (26-83)||(40686773-40686830)
chr1 (39-84)||(43942324-43942369)
chr1 (23-83)||(39828255-39828315)
[»] chr2 (7 HSPs)
chr2 (38-86)||(18512154-18512202)
chr2 (26-85)||(43586018-43586077)
chr2 (32-96)||(14373429-14373493)
chr2 (32-96)||(44605141-44605205)
chr2 (32-85)||(13501091-13501144)
chr2 (48-85)||(14450808-14450845)
chr2 (39-84)||(26787812-26787857)
[»] chr3 (3 HSPs)
chr3 (39-85)||(6984764-6984810)
chr3 (33-85)||(49179728-49179780)
chr3 (32-81)||(41319327-41319376)
[»] chr8 (7 HSPs)
chr8 (27-80)||(14227210-14227263)
chr8 (32-85)||(26915253-26915306)
chr8 (32-85)||(42874515-42874568)
chr8 (40-83)||(37225758-37225801)
chr8 (32-85)||(10497829-10497882)
chr8 (40-85)||(27733848-27733893)
chr8 (49-85)||(31119097-31119133)
[»] chr7 (5 HSPs)
chr7 (32-85)||(5937434-5937487)
chr7 (46-85)||(2144552-2144591)
chr7 (32-85)||(1885566-1885619)
chr7 (49-86)||(2143865-2143902)
chr7 (46-86)||(28635182-28635222)
[»] chr5 (8 HSPs)
chr5 (26-83)||(26205775-26205832)
chr5 (36-85)||(30080514-30080563)
chr5 (33-86)||(39424635-39424688)
chr5 (40-96)||(10010555-10010611)
chr5 (31-83)||(11596470-11596522)
chr5 (26-86)||(21049631-21049691)
chr5 (25-85)||(38784792-38784852)
chr5 (45-85)||(42192282-42192322)
[»] chr4 (8 HSPs)
chr4 (26-81)||(11017799-11017854)
chr4 (38-85)||(13117428-13117475)
chr4 (46-85)||(13307884-13307923)
chr4 (26-85)||(37496691-37496750)
chr4 (39-85)||(44362666-44362712)
chr4 (37-86)||(22596992-22597041)
chr4 (46-85)||(13484030-13484070)
chr4 (39-86)||(31851906-31851956)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 125 - 292
Target Start/End: Complemental strand, 34868106 - 34867939
Alignment:
Q  125 gataagggctagtttgaaatgtcacgtgaagtgtgttttggataacatgtttgtgttttgcaaatactctgatgaaagatgtgtaatgtgcaattatgat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  34868106 gataagggctagtttgaaatgtcacgtgaagtgtgttttggataacatgtttgtgttttggaaatactcagatgaaagatgtgtaatgtgcaattatgat 34868007  T
Q  225 atcattttcatttgaataggaattataacatttatatcatgaaacacagaaacggacactagacatga 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34868006 atcattttcatttgaataggaattataacatttatatcatgaaacacagaaacggacactagacatga 34867939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 34868254 - 34868128
Alignment:
Q  1 agagattagggtgtgtgatactcaaacactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacatttctcggtgtaatg 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||  ||    
T  34868254 agagattagggtgcgtgatactcaaacactaacacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatcacatttctcggtgtcgtg 34868155  T
Q  101 acacggacatcgtgacacatctttgat 127  Q
    |||||||||||||||||||||||||||    
T  34868154 acacggacatcgtgacacatctttgat 34868128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 10031557 - 10031616
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||| ||||||| |||||| ||||||||||||||||||  ||||||||||||||||||||    
T  10031557 acacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcaca 10031616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 4859188 - 4859126
Alignment:
Q  23 caaacactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||||||||||| |||||||||||||| | |||||||||||  |||||| |||||||||||||    
T  4859188 caaacactaacatgtcgacaccaataataatttgagaaaatgacataatccaatgtaatcaca 4859126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 19369810 - 19369863
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||||| |||||  ||||||||||||||||||  ||||||||||||||||||||    
T  19369810 acacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcaca 19369863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 31430266 - 31430327
Alignment:
Q  25 aacactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    |||||| ||| ||| ||||||||||||||||||||||||  ||| ||| |||||||||||||    
T  31430266 aacacttacatgtcaacaccaataaaattttgagaaaatgacatgattaaatgtaatcacat 31430327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 15443681 - 15443737
Alignment:
Q  25 aacactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaat 81  Q
    |||||| ||||||||||| |||||| | |||||||||||| ||||||||||| ||||    
T  15443681 aacactgacacgtcgacatcaataataatttgagaaaataacataattcaatataat 15443737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 5579649 - 5579700
Alignment:
Q  34 acgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||| ||||||||||||||||||  |||| ||||||||| |||||    
T  5579649 acgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcaca 5579700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 6751934 - 6751895
Alignment:
Q  46 ataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  6751934 ataaaattttgagaaaatgacataattcaatgtaatcaca 6751895  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 9024256 - 9024191
Alignment:
Q  18 atactcaaacactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatca 83  Q
    ||||||| ||||  |||||||||||| ||| | | |||||||||||  ||||||||||||||||||    
T  9024256 atactcatacacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatca 9024191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 12627891 - 12627831
Alignment:
Q  23 caaacactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatca 83  Q
    |||||||||||||||||||||  |||  | ||| |||||||| |||| |||||||||||||    
T  12627891 caaacactaacacgtcgacacggatactaatttaagaaaataacatatttcaatgtaatca 12627831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 31115477 - 31115529
Alignment:
Q  31 aacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatca 83  Q
    ||||||||||||||||||| | |||||| ||||| || |||||||||| ||||    
T  31115477 aacacgtcgacaccaataataatttgagtaaataacacaattcaatgtgatca 31115529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 18180 - 18124
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatc 82  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  18180 acactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatc 18124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 14332396 - 14332465
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacatttctcggtgt 96  Q
    ||||||||| ||||||||| ||||||||| ||||||||  ||||||||||||||||||||| | |||||||    
T  14332396 acactaacaagtcgacaccgataaaattt-gagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 18946097 - 18946048
Alignment:
Q  35 cgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcac 84  Q
    ||||||||||| | |||||||||||||||  |||||||||||||||||||    
T  18946097 cgtcgacaccagtcaaattttgagaaaatgacataattcaatgtaatcac 18946048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 17080951 - 17080895
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcac 84  Q
    ||||||||||  |||||||||||| | |||||||||||| ||||||| |||||||||||    
T  17080951 acactaacac--cgacaccaataataatttgagaaaataacataattgaatgtaatcac 17080895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 40176596 - 40176650
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    ||||||| ||||| ||||||||||||||||||  | | |||||||||||||||||    
T  40176596 acacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatcacat 40176650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 34184674 - 34184715
Alignment:
Q  45 aataaaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    |||||||| |||||||||||  ||||||||||||||||||||    
T  34184674 aataaaatcttgagaaaataatataattcaatgtaatcacat 34184715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 40686830 - 40686773
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatca 83  Q
    ||||| ||||||||||| | |||||||||||| |||||   |||||||||||||||||    
T  40686830 acactgacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatca 40686773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 43942324 - 43942369
Alignment:
Q  39 gacaccaataaaattttgagaaaatatcataattcaatgtaatcac 84  Q
    |||||||||||   |||||||||||| |||||||||||||||||||    
T  43942324 gacaccaataatgatttgagaaaataacataattcaatgtaatcac 43942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 39828255 - 39828315
Alignment:
Q  23 caaacactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatca 83  Q
    |||||||  |||||||||||||||||| | |||||||||||| |||| || ||| ||||||    
T  39828255 caaacacggacacgtcgacaccaataataatttgagaaaataacatactttaatctaatca 39828315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 18512202 - 18512154
Alignment:
Q  38 cgacaccaataaaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  18512202 cgacaccgataaaattttgagaaaataatataattcaatgtaatcacat 18512154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 43586077 - 43586018
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||| ||||||| ||||  ||||||||||||||||||  ||||||||||||||||||||    
T  43586077 acactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcaca 43586018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 14373493 - 14373429
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacatttctcggtgt 96  Q
    ||||||| ||||||||||||||||||   |||  ||||||||||||||||||||| | |||||||    
T  14373493 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 14373429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 44605205 - 44605141
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacatttctcggtgt 96  Q
    ||||||| || ||||||| | |||||||||||| |||||||||||||||| |||| | |||||||    
T  44605205 acacgtcaacgccaataataatttgagaaaataacataattcaatgtaattacatgtgtcggtgt 44605141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 13501144 - 13501091
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||| ||||| || |||||||||| |||||||  ||||||||||||||||||||    
T  13501144 acacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcaca 13501091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 14450845 - 14450808
Alignment:
Q  48 aaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcaca 14450808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 26787857 - 26787812
Alignment:
Q  39 gacaccaataaaattttgagaaaatatcataattcaatgtaatcac 84  Q
    ||||||||||||| |||||||||||  |||||||| ||||||||||    
T  26787857 gacaccaataaaaatttgagaaaatgacataattcgatgtaatcac 26787812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 6984764 - 6984810
Alignment:
Q  39 gacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||||||||||||||||||||||||| || |||||||| ||||||||    
T  6984764 gacaccaataaaattttgagaaaataacacaattcaatataatcaca 6984810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 49179780 - 49179728
Alignment:
Q  33 cacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||||||||||| |||||||||||||||| |  |||||||| |||||||||||    
T  49179780 cacgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcaca 49179728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 41319376 - 41319327
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaat 81  Q
    |||||||||||||||||| | ||||| |||||  ||||||||||||||||    
T  41319376 acacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 14227210 - 14227263
Alignment:
Q  27 cactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaa 80  Q
    |||| ||||||| |||||||||| | |||||||||||| |||||||||||||||    
T  14227210 cactgacacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 26915306 - 26915253
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||||  ||||||||||||||||||  ||||||| ||||||||||||    
T  26915306 acacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcaca 26915253  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 42874515 - 42874568
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||||||||||||  ||| |||||||||||||  ||||||||||||||||||||    
T  42874515 acacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcaca 42874568  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 37225801 - 37225758
Alignment:
Q  40 acaccaataaaattttgagaaaatatcataattcaatgtaatca 83  Q
    |||||||||| | |||||||||||| ||||||||||||||||||    
T  37225801 acaccaataataatttgagaaaataacataattcaatgtaatca 37225758  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 10497882 - 10497829
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||| ||||||  ||||||||||||||||||| |||||||  |||||||||||    
T  10497882 acacgccgacacggataaaattttgagaaaataacataatttgatgtaatcaca 10497829  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 27733848 - 27733893
Alignment:
Q  40 acaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||| ||||||||||||||||||   |||||||||||||||||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcaca 27733893  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 31119097 - 31119133
Alignment:
Q  49 aaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||||||||||||||  ||||||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcaca 31119133  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 5937487 - 5937434
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||| ||||  ||||||||||||||||||  ||||||||||||||||||||    
T  5937487 acacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcaca 5937434  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 2144591 - 2144552
Alignment:
Q  46 ataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcaca 2144552  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 1885566 - 1885619
Alignment:
Q  32 acacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||| |||||||  |||||||||||| |||||  ||||||||||||||||||||    
T  1885566 acacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcaca 1885619  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 2143902 - 2143865
Alignment:
Q  49 aaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    |||||||||||||||  |||||||||||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcacat 2143865  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 28635222 - 28635182
Alignment:
Q  46 ataaaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    |||||||||||||||||| ||| ||||||| ||||||||||    
T  28635222 ataaaattttgagaaaatttcacaattcaacgtaatcacat 28635182  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 26205832 - 26205775
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatca 83  Q
    ||||| ||||||||| ||| ||||||||||||||||||  ||||||||| ||||||||    
T  26205832 acactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatca 26205775  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 30080563 - 30080514
Alignment:
Q  36 gtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||  ||||||||||||||||||  ||||||||||||||||||||    
T  30080563 gtcgacactgataaaattttgagaaaatgacataattcaatgtaatcaca 30080514  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 39424635 - 39424688
Alignment:
Q  33 cacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    ||||||||||||||||| | |||||||||||  ||| |||||||||| ||||||    
T  39424635 cacgtcgacaccaataataatttgagaaaatgacatgattcaatgtattcacat 39424688  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 10010555 - 10010611
Alignment:
Q  40 acaccaataaaattttgagaaaatatcataattcaatgtaatcacatttctcggtgt 96  Q
    |||| ||||||||||||| |||||  ||||||||| ||||||||||| | |||||||    
T  10010555 acactaataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcggtgt 10010611  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 11596522 - 11596470
Alignment:
Q  31 aacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatca 83  Q
    |||||||||| ||| |||| | |||||||||||  ||||||||||||||||||    
T  11596522 aacacgtcgataccgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 21049691 - 21049631
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    |||||||||||||||||| ||||| | |||| ||||||  || ||||| ||||||||||||    
T  21049691 acactaacacgtcgacactaataataatttgcgaaaatggcacaattcgatgtaatcacat 21049631  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 38784792 - 38784852
Alignment:
Q  25 aacactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||| ||| |||| |||||||| ||| |||||   |||||||||||||||||||    
T  38784792 aacactaacacatcggcaccgataaaattgtgaaaaaatgatataattcaatgtaatcaca 38784852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 42192282 - 42192322
Alignment:
Q  45 aataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||||||| |||  ||||||||||||||||||||    
T  42192282 aataaaattttgagacaatgacataattcaatgtaatcaca 42192322  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 11017854 - 11017799
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaat 81  Q
    |||| ||||||| ||||||||||||||||| ||||||||   ||||||||||||||    
T  11017854 acacgaacacgttgacaccaataaaattttaagaaaataatctaattcaatgtaat 11017799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 13117428 - 13117475
Alignment:
Q  38 cgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||||||||| ||||||||  || |||||||||||||||||    
T  13117428 cgacaccaataaaatttggagaaaatgacaaaattcaatgtaatcaca 13117475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 13307884 - 13307923
Alignment:
Q  46 ataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  13307884 ataaaattttgagaaaatgacataattcaatgtaatcaca 13307923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 37496691 - 37496750
Alignment:
Q  26 acactaacacgtcgacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    ||||| |||||| |||||| ||||  ||||||||||||  ||||||||||||||||||||    
T  37496691 acactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcaca 37496750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 44362666 - 44362712
Alignment:
Q  39 gacaccaataaaattttgagaaaatatcataattcaatgtaatcaca 85  Q
    |||||| ||||||||||||||||||  ||||||| ||||||||||||    
T  44362666 gacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 44362712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 22597041 - 22596992
Alignment:
Q  37 tcgacaccaataaaattttgagaaaatatcataattcaatgtaatcacat 86  Q
    ||||||||||||| | |||||||||||  |||||||||| ||||||||||    
T  22597041 tcgacaccaataataatttgagaaaattgcataattcaacgtaatcacat 22596992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 13484030 - 13484070
Alignment:
Q  46 ataaaattttgagaaaatatcataattc-aatgtaatcaca 85  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  13484030 ataaaattttgagaaaataacataattcaaatgtaatcaca 13484070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 31851956 - 31851906
Alignment:
Q  39 gacaccaataaaattttgagaa---aatatcataattcaatgtaatcacat 86  Q
    |||||| |||||||||||||||   |||| |||||||||||||||||||||    
T  31851956 gacaccgataaaattttgagaagaaaatagcataattcaatgtaatcacat 31851906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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