View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_55 (Length: 291)
Name: NF9261_low_55
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 45245562 - 45245804
Alignment:
| Q |
17 |
caatgctacatagcaggttgtggctgccccctacatttagataagagaaagttaacatgatactgactactaagctaagaaaagtgaaatatcagaaatc |
116 |
Q |
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| T |
45245562 |
caatgctacatagcatgttgtggctgccccctacatttagataggagaaagttaacttgcaactgattactaagcaaaaaaaagtgaaatatcagaaatc |
45245661 |
T |
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| Q |
117 |
ttctaatctatgtttcgttattggtcccttaataaatgtttatagcaaccaatatttatttgaattgatcctcacatttataaatcataggtcatactga |
216 |
Q |
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||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
45245662 |
ttctaatctgtgtttctttattggtcccttaataaacgtttataacaaccaatatttatttgacacgaccctcacatttataaatcataggtcatactga |
45245761 |
T |
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| Q |
217 |
ttatgaaatacctgctgaacatttttcatcacaagtttcccaa |
259 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45245762 |
ttatgacatacctgctgaacatttttcatcacaagtttcccaa |
45245804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 97 - 259
Target Start/End: Original strand, 45229722 - 45229884
Alignment:
| Q |
97 |
aaagtgaaatatcagaaatcttctaatctatgtttcgttattggtcccttaataaatgtttatagcaaccaatatttatttgaattgatcctcacattta |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45229722 |
aaagtgaaatatcagaaatcttctaatctatgtttcgttattggtcccttaataaatgtttatagcaaccaatatttatttgaattgatcctcgcattta |
45229821 |
T |
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| Q |
197 |
taaatcataggtcatactgattatgaaatacctgctgaacatttttcatcacaagtttcccaa |
259 |
Q |
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| T |
45229822 |
taaatcataggtcatactgattatgaaatacctgctgaacatttttcatcacaagtttcccaa |
45229884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 45228203 - 45228276
Alignment:
| Q |
17 |
caatgctacatagcaggttgtggctgccccctacatttagataagagaaagttaacatgatactgactactaag |
90 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45228203 |
caatgctacatagcatgtagtggctgccccctacatttagataagagaaagttaacatgatactgactactaag |
45228276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 45209500 - 45209615
Alignment:
| Q |
145 |
ttaataaatgtttatagcaaccaatatttatttgaattgatcc-tcacatttataaatcataggtcatactgattatgaaatacctgctgaacatttttc |
243 |
Q |
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|||||||||||||||| |||||||||||||||||| ||| || |||||||||||||| ||||||||| ||||| ||| ||||||| |||| |||||| |
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| T |
45209500 |
ttaataaatgtttataacaaccaatatttatttgacatgacccctcacatttataaatagtaggtcataatgattttgacatacctgtggaacgtttttc |
45209599 |
T |
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| Q |
244 |
atcacaagtttcccaa |
259 |
Q |
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||||||||||| |||| |
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| T |
45209600 |
atcacaagtttgccaa |
45209615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 45209399 - 45209459
Alignment:
| Q |
17 |
caatgctacatagcaggttgtggctgccccctacatttagat--aagagaaagttaacatg |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
45209399 |
caatgctacatagcaggttgtggctgccccctacatttagatagaggagaaagttaacatg |
45209459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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