View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_low_69 (Length: 224)

Name: NF9261_low_69
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_low_69
NF9261_low_69
[»] chr7 (1 HSPs)
chr7 (18-208)||(41705009-41705199)
[»] chr6 (3 HSPs)
chr6 (83-178)||(1453265-1453360)
chr6 (83-178)||(1464957-1465052)
chr6 (110-146)||(7564110-7564146)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 41705009 - 41705199
Alignment:
Q  18 agagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggcatgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705009 agagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggcatgtc 41705108  T
Q  118 ttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaagacatgattcttagtacaacataggaactg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41705109 ttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaagacatgactcttagtacaacataggaactg 41705199  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 1453265 - 1453360
Alignment:
Q  83 tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaa 178  Q
    ||||||||  ||||| |||||||||||  |||| ||||||||||||||||||| |||||||||||| ||||||||| |||||| || |||||||||    
T  1453265 tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccaccatgcgttggatcgaa 1453360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 1464957 - 1465052
Alignment:
Q  83 tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaa 178  Q
    ||||||||  ||||| |||||||||||  |||| ||||||||||||||||||| |||||||||||| ||||||||| |||||| || |||||||||    
T  1464957 tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccaccatgcgttggatcgaa 1465052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 7564110 - 7564146
Alignment:
Q  110 ggcatgtcttgtgtgacacatgaaccgggtaaccaag 146  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  7564110 ggcatgtcttgtgtaacacatgaaccaggtaaccaag 7564146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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