View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_low_72 (Length: 220)

Name: NF9261_low_72
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_low_72
NF9261_low_72
[»] chr4 (4 HSPs)
chr4 (1-205)||(13040986-13041190)
chr4 (1-89)||(31838595-31838683)
chr4 (1-95)||(33834421-33834515)
chr4 (1-95)||(37917238-37917332)
[»] chr2 (1 HSPs)
chr2 (1-187)||(17726332-17726518)
[»] chr3 (2 HSPs)
chr3 (1-135)||(53990126-53990260)
chr3 (165-201)||(50328855-50328891)
[»] chr5 (1 HSPs)
chr5 (1-131)||(30592270-30592400)
[»] chr8 (1 HSPs)
chr8 (41-187)||(9337721-9337867)
[»] chr1 (2 HSPs)
chr1 (103-180)||(41489195-41489272)
chr1 (1-92)||(18416863-18416954)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 13041190 - 13040986
Alignment:
Q  1 tcacaaggggaattcaagaattgactaacagcactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctcaggt 100  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13041190 tcacaaggggaattcaagaattgactaacaacagtgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctccggt 13041091  T
Q  101 accttcctggatctgaaaaggtctccccttgatcaggtagcagcttgacatttgggtccataggagtatcaatcggcttgcaatcaagcatacctgtttc 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  13041090 accttcctggatctgaaaaggtctccctttgatcaggtagcagcttgacatttgggtccataggagtatcaatcagcttgcaatcaagcataactgtttc 13040991  T
Q  201 ctcca 205  Q
    |||||    
T  13040990 ctcca 13040986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31838595 - 31838683
Alignment:
Q  1 tcacaaggggaattcaagaattgactaacagcactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaac 89  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31838595 tcacaaggggaattcaagaattgactaacaacactgactgcatatgaaatatcaggtcttgtcatggtcaaataatttagcttcccaac 31838683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33834515 - 33834421
Alignment:
Q  1 tcacaaggggaattcaagaattgactaacagcactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacct 95  Q
    |||||||| || ||||| |||||||| ||| |||| || ||| | |||||||| ||||| ||||| || | ||||||||||||||||||||||||    
T  33834515 tcacaaggtgagttcaaaaattgactcacaacactaacagcaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaacct 33834421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 37917238 - 37917332
Alignment:
Q  1 tcacaaggggaattcaagaattgactaacagcactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacct 95  Q
    |||||||| || ||||| |||||||| ||| |||| || ||| | |||||||| ||||| ||||| || | ||||||||| ||||||||||||||    
T  37917238 tcacaaggtgagttcaaaaattgactcacaacactaacagcaaacgaaatatctggtctagtcatagtaagataattcagtttcccaactaacct 37917332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 17726518 - 17726332
Alignment:
Q  1 tcacaaggggaattcaagaattgactaacagcactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctcaggt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17726518 tcacaaggggaattcaagaattgactaacaacactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctccggt 17726419  T
Q  101 accttcctggatctgaaaaggtctccccttgatcaggtagcagcttgacatttgggtccataggagtatcaatcggcttgcaatcaa 187  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17726418 accttcctggatctgaaaaggtctccccttgatcaggtaacagcttgacatttgggtccataggagtatcaatcggcttgcaatcaa 17726332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 53990260 - 53990126
Alignment:
Q  1 tcacaaggggaattcaagaattgactaacagcactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctcaggt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  53990260 tcacaaggggaattcaagaattgactaacaacactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctccggt 53990161  T
Q  101 accttcctggatctgaaaaggtctccccttgatca 135  Q
    |||||||||||||||||||||||||||||||||||    
T  53990160 accttcctggatctgaaaaggtctccccttgatca 53990126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 50328891 - 50328855
Alignment:
Q  165 agtatcaatcggcttgcaatcaagcatacctgtttcc 201  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  50328891 agtatcaattggcttgcaatcaagcataccagtttcc 50328855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 30592270 - 30592400
Alignment:
Q  1 tcacaaggggaattcaagaattgactaacagcactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctcaggt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30592270 tcacaaggggaattcaagaattgactaacaacactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctccggt 30592369  T
Q  101 accttcctggatctgaaaaggtctccccttg 131  Q
    |||||||||||||||||||||||||||||||    
T  30592370 accttcctggatctgaaaaggtctccccttg 30592400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 9337867 - 9337721
Alignment:
Q  41 catatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctcaggtaccttcctggatctgaaaaggtctccccttgatcaggtag 140  Q
    ||||||||||||  |||||| |||||||||||||||  ||| || |||||||||||| |  |||||||  |||||||||||||||||||| |||||||||    
T  9337867 catatgaaatatttggtcttatcatggtcaaataatctagcatcacaactaacctcatgctccttcctatatctgaaaaggtctccccttaatcaggtag 9337768  T
Q  141 cagcttgacatttgggtccataggagtatcaatcggcttgcaatcaa 187  Q
     || |||||||||| ||||||| |||||| ||||||| |||||||||    
T  9337767 aagtttgacatttgagtccatatgagtatgaatcggcctgcaatcaa 9337721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 41489195 - 41489272
Alignment:
Q  103 cttcctggatctgaaaaggtctccccttgatcaggtagcagcttgacatttgggtccataggagtatcaatcggcttg 180  Q
    ||||||| |||||| || | ||||||||||| |||||| || ||||||||||| ||||| ||||||||||||||||||    
T  41489195 cttcctgaatctgataaaggctccccttgattaggtagaagtttgacatttggatccatcggagtatcaatcggcttg 41489272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 18416863 - 18416954
Alignment:
Q  1 tcacaaggggaattcaagaattgactaacagcactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaa 92  Q
    |||||||| || ||||| |||||||| ||| |||| ||  || | |||||||| ||||| ||||| || | |||||||||||||||||||||    
T  18416863 tcacaaggtgagttcaaaaattgactcacaacactaacatcaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaa 18416954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University