View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_9 (Length: 679)
Name: NF9261_low_9
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 261 - 662
Target Start/End: Original strand, 34867558 - 34867959
Alignment:
| Q |
261 |
tgtcacaatcaatatatggcatgagattttaaggatcatttcggtgttatctgagtgaaaacaatatacaacctcaaaaatcaagctcaatactgaaaca |
360 |
Q |
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| T |
34867558 |
tgtcacaatcaatatgtggcatgagattttaaggatcatttcggtgttatctgagtgaaaacaatatacaaactcaaaaatcaagctcaatactgaaaca |
34867657 |
T |
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| Q |
361 |
tggcagattaacagggtgattttactgattctatcctcgattcagttttacacagaattccccaaaatcattttagatacaggactcagatttggtttca |
460 |
Q |
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| T |
34867658 |
tggcagattaacagggtgattttactgattctatcctcgattcagttttacgcagaattccccaaaatcattttagatacaggacttagatttggtttca |
34867757 |
T |
|
| Q |
461 |
aatttgccaaatccaaacctgattcttgtcttattaaccttgacaaaccataacaccactctctacacataaatgctatgtagcaccgacacgtatttgt |
560 |
Q |
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| T |
34867758 |
aatttgccaaatccaaacttgattcttgtcttatcaaccttgacaaaccataacaccactctctacacataaatgctatgtagcaccgacacgtatttgt |
34867857 |
T |
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| Q |
561 |
gtccaacactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgtccgtgtctatatcatgtctagtgtccgttt |
660 |
Q |
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| T |
34867858 |
gtccaacactgacacatgtgattatattgaatgatttcattttcccaaaccattcttggtgtcgacgtgtccgtgtctatatcatgtctagtgtccgttt |
34867957 |
T |
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| Q |
661 |
ct |
662 |
Q |
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| T |
34867958 |
ct |
34867959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 34866954 - 34867199
Alignment:
| Q |
18 |
gttagtgcttaatttccataaacagtacctcaaacaaaagtaaaatttccactatatatctaactttctgcatatacaagttccaagaaaaccaatcatt |
117 |
Q |
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| T |
34866954 |
gttagtgcttaatttccataaacagtacctcaaacaaaagtaaaatttccaatatatatctaactttctgcatatacaagttccaagaaaaccaatcatt |
34867053 |
T |
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| Q |
118 |
aaggaaatttatcccttcaacaagatcagtgaagtagggtaggcgttgcctaaaatctttatcgaaaacagcatgacgaatagaaaataattctgccttt |
217 |
Q |
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| T |
34867054 |
aaggaaatttatcccttcaacaggatcagtgaagtagggtaggcgttgcctaaaatctttatcgaaaacagcatgacgaatagaaaataattctgccttt |
34867153 |
T |
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| Q |
218 |
agaagcagttcaaccttgacagggttttgcatattttaaaacatgt |
263 |
Q |
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| T |
34867154 |
agaagcagttcaaccttgacagggttttgcatattttaaaacatgt |
34867199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 636
Target Start/End: Original strand, 9024178 - 9024248
Alignment:
| Q |
566 |
acactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgtccgtgt |
636 |
Q |
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| T |
9024178 |
acactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt |
9024248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 609
Target Start/End: Complemental strand, 42874588 - 42874536
Alignment:
| Q |
557 |
ttgtgtccaacactgacacatgtgattatattgaatgatttcattttcccaaa |
609 |
Q |
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| T |
42874588 |
ttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaa |
42874536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 51856765 - 51856675
Alignment:
| Q |
148 |
gaagtagggtaggcgttgcctaaaatctttatcgaaaacagcatgacgaatagaaaataattctgcctttagaagcagttcaaccttgaca |
238 |
Q |
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| T |
51856765 |
gaagtatggtaggcgttgcctaaaaacttaataaaaaacaacatgacaagtagaaaatcatggtgcctttggatgcacttcaaccatgaca |
51856675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 566 - 630
Target Start/End: Original strand, 23287351 - 23287415
Alignment:
| Q |
566 |
acactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgt |
630 |
Q |
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| T |
23287351 |
acactgacacatataattatattgaattatgtcattttcctaaattattattggtgtcgacgtgt |
23287415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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