View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_high_11 (Length: 489)
Name: NF9262_high_11
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 472
Target Start/End: Complemental strand, 45160519 - 45160075
Alignment:
| Q |
17 |
gtgttatcctgtgaatatcaagtatcaacaaaaggaaattattacaaatggtaaatatgtaataaatagtagaannnnnnnaattcattaacgatgtata |
116 |
Q |
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| T |
45160519 |
gtgttatcctgtgaatatcaagtatcaacaaaaggaaattattataaatggtaaatatgtaataaatagcagaatttttttaattcattaacgatgtata |
45160420 |
T |
|
| Q |
117 |
taaattcatcctcacaagttatatttgtaactctcaaatactagatatgaaattttttgtaagactgaatttgaaacttaaatagatataattgaaaaca |
216 |
Q |
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| T |
45160419 |
taagttcatcctaacaagttatatttgtaactctcaaatactagatatgaaattttttgaaagactgaatttgaaacttaaatagatataattgaaaa-- |
45160322 |
T |
|
| Q |
217 |
taccaagagcattataaaactgcaagtcaaccaattatttggctcataactagctactttctatagttttaaaaataattagttttaaaaataattagtg |
316 |
Q |
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| T |
45160321 |
---caagagcatgataaaactgcaagtcaaccaattatttggctcataactagctactttctatagtttt----------------aaaaataattagtg |
45160241 |
T |
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| Q |
317 |
attagtgttttttgtatgaatgtgatcaataatttactggtacaaattttattttatgtaaatgacacattcaaggcgcta----------taagttttt |
406 |
Q |
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| T |
45160240 |
attagtgttttttgtatgaatgtgatcaataatttattggtacaaattttatgttatgtaaatgacacattcaaggcgctataaaacattgtaagttttt |
45160141 |
T |
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| Q |
407 |
tgtgacaatattttttgtaattaaaattactttcttttcacgtaataccttcaccaaggcaccaat |
472 |
Q |
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| T |
45160140 |
tgtgacaatattttttgtaattaaaattactttcttttcacgtaataccttcaccaaggcaccaat |
45160075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 202 - 472
Target Start/End: Original strand, 24128096 - 24128355
Alignment:
| Q |
202 |
atataattgaaaacataccaagagcattataaaactgcaagtcaaccaattatttggctcataactagctactttctatagttttaaaaataattagttt |
301 |
Q |
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| T |
24128096 |
atataattgaaagcacaccaagagcatgataaaactgcaagtcaaccaattatttggctcataactagctactttctatagtttt--------------- |
24128180 |
T |
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| Q |
302 |
taaaaataattagtgattagtgttttttgtatgaatgtgatcaataatttactggtacaaattttattttatgtaaatgacacattcaaggcgc------ |
395 |
Q |
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| T |
24128181 |
-aaaaataattagtgattagtgttttttgtttgaatatgatcaataatttattggtacaa-----attttatgtaaatgaaacattcaaggcacaatcaa |
24128274 |
T |
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| Q |
396 |
----tataagttttttgtgacaatattttttgtaattaaaattactttcttttcacgtaataccttcaccaaggcaccaat |
472 |
Q |
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| T |
24128275 |
acattgtaagttttttgtgacgatattttttgtaattaaaatgactttattttcatgtaataccttcactaaagcaccaat |
24128355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 24127954 - 24128070
Alignment:
| Q |
98 |
aattcattaacgatgtatataaattcatcctcacaagttatatttgtaactctcaaatact--agatatgaaattttttgtaagactgaatttgaaactt |
195 |
Q |
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|||| ||||| || |||||| |||||||||| ||||||||||||||||||||||| ||||| | |||||||| |||| ||||| |||||||||||||| |
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| T |
24127954 |
aattaattaatgacgtatatgaattcatcctaacaagttatatttgtaactctcagatactaaatatatgaaa-cttttataagaatgaatttgaaactt |
24128052 |
T |
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| Q |
196 |
aaatagatataattgaaa |
213 |
Q |
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| T |
24128053 |
aaatagatataattgaaa |
24128070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 24127742 - 24127792
Alignment:
| Q |
13 |
tttggtgttatcctgtgaatatcaagtatcaacaaaaggaaattattacaa |
63 |
Q |
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| T |
24127742 |
tttggtgttaacctgtgaatatcaagtatcaacaaaaggaaattattacaa |
24127792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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