View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_high_16 (Length: 432)
Name: NF9262_high_16
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 4939397 - 4939800
Alignment:
| Q |
18 |
atcatcattaacattggtgttttttccacaatctgcattttcctgaagtaaaaaagcaaactcaagttgcacctccacttcacccattgtt----ggtcg |
113 |
Q |
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| T |
4939397 |
atcatcatcaacattggtgtttttgctacaatctgcattttcctgaagtaaa--------ctcaagttgcacctccacttcacccattgttaattggtcg |
4939488 |
T |
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| Q |
114 |
ttcatttggatcatatt---gtaaacatctttttgtcacatctacaaatacttcccaacattttggtgcaatgcttcctttgagatactcatcaatattc |
210 |
Q |
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| T |
4939489 |
ttcatttggatcatattattgtaaacatctttttgtcacatctacaaatacttcccaacaatttggtgcaatgcttcctttgagatactcatcaatattc |
4939588 |
T |
|
| Q |
211 |
tcctccattgggagtctctgtctcttaacattttctaacttctccaagcataccacttctagtagaattttaccaaaggagtaaacgtcacacttatctg |
310 |
Q |
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| T |
4939589 |
tcttctattgggaacctttgtctc--aacattttctaacttttccaagcataccacttctagtagaatattaccaaaggagtaaacgtcacacttatctg |
4939686 |
T |
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| Q |
311 |
ttactttattgttttctaaaatctctggggccacgtaaccatatgaacctatatatgagagcaagtatcaattatttaagtcaatatacaacttagccct |
410 |
Q |
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| T |
4939687 |
ttactttattgttttctaaaatctctggggccacgtaaccatatgaacctatatatgagagcaagtatcaattatttaagtcaatatacaacttagccct |
4939786 |
T |
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| Q |
411 |
cacctcagaattat |
424 |
Q |
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| T |
4939787 |
cacctcataattat |
4939800 |
T |
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