View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_high_17 (Length: 418)
Name: NF9262_high_17
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 225 - 399
Target Start/End: Complemental strand, 29719287 - 29719113
Alignment:
| Q |
225 |
gggacacttcaaagttcaaaagagaaccttgatcatacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccac |
324 |
Q |
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| T |
29719287 |
gggacacttcaaagttcaaaagagaaccttgatcatacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccac |
29719188 |
T |
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| Q |
325 |
gtgtcccaggccttgtagtgaacataatatcctgaagtcttgggaacttagtacctttggttttgttattggcat |
399 |
Q |
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| T |
29719187 |
gtgtcccaggccttgtagtgaacataatatcctgaagtcttgggaacttagtacctttggttttgttattggcat |
29719113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 29719515 - 29719353
Alignment:
| Q |
1 |
tgggaatggacaataagagctaattaaaactcatacacaaaatattctatctctgcaaagaagaacaacaaataaccagaaagaaaatacaacgtaactt |
100 |
Q |
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| T |
29719515 |
tgggaatggacaataagtgctaattaagactcatacacaaaatattctatctctgcaaagaagaacaacaaataaccagaaagaaaatacaacgtaactt |
29719416 |
T |
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| Q |
101 |
agcaaaagtcccttaacataacgaaatataaaaggtcacaaaaacacaggtatcccttaacat |
163 |
Q |
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| T |
29719415 |
agcaaaagtcccttaacataacgaaatataaaaggtcacaaaaacacaggtatcccttaacat |
29719353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 225 - 399
Target Start/End: Complemental strand, 29690573 - 29690409
Alignment:
| Q |
225 |
gggacacttcaaagttcaaaagagaaccttgatcatacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccac |
324 |
Q |
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| T |
29690573 |
gggacacttcaaagttcaaaa-----ccttgatcatacatgaaaattaa-----gaacagtgaaggtggaaaattgtgtggtgtgctcatcaagttccac |
29690484 |
T |
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| Q |
325 |
gtgtcccaggccttgtagtgaacataatatcctgaagtcttgggaacttagtacctttggttttgttattggcat |
399 |
Q |
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| T |
29690483 |
gtgtcccaggccttgtagtgaacataatatcctgaagtcttgggaacttagtacctttggttttgttattggcat |
29690409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29690824 - 29690747
Alignment:
| Q |
1 |
tgggaatggacaataagagctaattaaaactcatacacaaaatattctatctctgcaaagaagaacaacaaataacca |
78 |
Q |
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| T |
29690824 |
tgggaatggacaataagtgctaattaaaactcatacacaaaatattctatctcttcaaagaagaacaataaataacca |
29690747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 29690706 - 29690639
Alignment:
| Q |
96 |
aacttagcaaaagtcccttaacataacgaaatataaaaggtcacaaaaacacaggtatcccttaacat |
163 |
Q |
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||||||| |||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||| |
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| T |
29690706 |
aacttagaaaaagtcccttaacataaggaaacataaaagttcacaaaaacacaggtgccccttaacat |
29690639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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