View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9262_high_24 (Length: 323)
Name: NF9262_high_24
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 11114668 - 11114372
Alignment:
| Q |
19 |
aatatgtacatttttctaaccaagaatccttatctaggtgtaaatttagatgtgtggttgatttgaagttaatcagaaggacatgtctgtgtctccgcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11114668 |
aatatgtacatttttctaaccaagaatccttatctaggtgtaaatttagatgtgtggttgatttgaagttaatcagaaggacatgtatgtgtctccgcca |
11114569 |
T |
|
| Q |
119 |
tcatttcctcttacttttgaaagctgaaaaataccttatatatggtctaaactgacctcagggcctagtttcagctctatgcgacatcatcgccaactat |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11114568 |
tcatttcctcatacttttgaaagctgaaaaataccttatatatggtctaaactgacctcagggcctagtttcagctctatgcgacatcatcgccaactat |
11114469 |
T |
|
| Q |
219 |
ggaggaataatccatacatttaaagtcagacacttgctcttcatctacacatcaggtttcatcactgcatattttctaatatagttgactctctgct |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11114468 |
ggaggaataatccatacatttaaagtcagacacttgctcttcatctacacatcaggtttcatcactgcatattttctaatatagttgactctctgct |
11114372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 2794576 - 2794636
Alignment:
| Q |
241 |
aagtcagacactt-gctcttcatctacacatcaggtttcatcactgcatattttctaatata |
301 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||||| |
|
|
| T |
2794576 |
aagtcagacactttgctcttcatctacacatcaagtttcat-attgcatactttctaatata |
2794636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 2800921 - 2800981
Alignment:
| Q |
240 |
aaagtcagacactt-gctcttcatctacacatcaggtttcatcactgcatattttctaatata |
301 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2800921 |
aaagtcagacacttcgctcttcatctacagtg--ggtttcatcactgcatattttctaatata |
2800981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 2810150 - 2810208
Alignment:
| Q |
240 |
aaagtcagacactt-gctcttcatctacacatcaggtttcatcactgcatattttctaa |
297 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||| |||||| ||| ||||||||||||||| |
|
|
| T |
2810150 |
aaagtcatacacttcgctcttcatctacgcataaggtttaatcgctgcatattttctaa |
2810208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University