View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9262_high_25 (Length: 320)

Name: NF9262_high_25
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9262_high_25
NF9262_high_25
[»] chr1 (1 HSPs)
chr1 (15-320)||(43654580-43654885)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 43654885 - 43654580
Alignment:
Q  15 agacaaacagtttcgtgtttcctttctcatttcaccattccaatgtacactctctcgctactttctctctctaaaacaaagacatagaaccccctccaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  43654885 agacaaacagtttcgtgtttcctttctcatttcaccattccaatgtacactctctcgctactttctctctctaaaataaagacatagaacccccaccaaa 43654786  T
Q  115 ccaaaccttcatccttccaccagcatgcttgtaatgccacagccacccaaacccttcaacacaatcaccatcacaatcatgatagccttcaccttcttcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43654785 ccaaaccttcatccttccaccagcatgcttgtaatgccacagccacccaaacccttcaacacaatcaccatcacaatcatgatagccttcaccttcttcc 43654686  T
Q  215 tcctcttcctcaccggtttcctccaattcccttctatttcaccctctctcccgggccccatccacgcttccttcccgctcccttctaccaatacctcctc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||    
T  43654685 tcctcttcctcaccggtttcctccaattcccttctatttcaccctctctcccgggtcccatccacgattccttcacgctcccttctacaaatacctcctc 43654586  T
Q  315 caaacc 320  Q
    ||||||    
T  43654585 caaacc 43654580  T

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