View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_1 (Length: 1037)
Name: NF9262_low_1
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 655; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 19 - 749
Target Start/End: Original strand, 36601354 - 36602086
Alignment:
| Q |
19 |
ttatgatctccaaaagtagaacaccgaaagagtaaacatcagttttctcatccactatgccatgcatgcaatattcaggagataaatatctgtgaaacaa |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601354 |
ttatgatctccaaaagtagaacgccgaaagagtaaacatcagttttctcatccactatgccatgcatgcaatattcaggagataaatatctgtgaaacaa |
36601453 |
T |
|
| Q |
119 |
gtcatttgtggaatattaaatcaagagaatcg----aaaagaaaagaaaaactatggcattagtatttcatgtttgcatacccgaatgtgccttcaaatg |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601454 |
gtcatttgtggaatattaaatcaagagaatcggaaaaaaaaaaaaaaaaaactatggcattagtatttcatgtttgcatacccgaatgtgccttcaaatg |
36601553 |
T |
|
| Q |
215 |
tggacatattatggtgagtcaattgttctggtaaccactttgcaagtccaaaatcacaaatctgtacaaattcttgattaataaaggaccgaaaaaagaa |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
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| T |
36601554 |
tggacatattatggtgagtcaattgttctggtaaccactttgcaagtccaaaatcacaaatctgtacaaattcttgattaataaaagcccgaaaatagaa |
36601653 |
T |
|
| Q |
315 |
gaaagattatgtgtgcaccaataagattgtatacaataatacaaaagattctcaaaagatatttctagctactggtctaacttacagtaagaacatgtat |
414 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
36601654 |
gaaaaattttgtgtgcaccaataagattgtatacaataatacaaaagattctcaaaatatattgctagctactggtctaacttacggtaagaacatgtat |
36601753 |
T |
|
| Q |
415 |
taacaaaacaaagagaatgtttaacatataacacacaacaacataaaatatttcatgtgttaagtaatactacagataaattatttcctcattatatccg |
514 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601754 |
taacaaaacaaaga--atgtttaacatataacacacaacaacataaaatatttcatgtgttaagtaatactacagataaattatttcctcattatatccg |
36601851 |
T |
|
| Q |
515 |
acgaacaagttaaataaaaacctgtggatcaaaattctctgtgagtagtatattttctgccttaatatctctatgaattattcgcctttgacaattctca |
614 |
Q |
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| T |
36601852 |
acgaacaagttaaataaaaacctgtggatcaaaattctctgtgagtagtatattttctgccttaatatctctatgaattattcgcctttgacaattctca |
36601951 |
T |
|
| Q |
615 |
tgcaaatagagaagaccatcagcaattccaagagcaactttataccttttactccaatccaatttggttttatctgaacctgaaatacatcatgagggaa |
714 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601952 |
tgcaaatagagaagaccatcagcaattccgagagcaactttataccttttactccaatccaatttggttttatctgaacctgaaatacatcatgagggaa |
36602051 |
T |
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| Q |
715 |
taagctataagtacatttaaagttgaaagcatgtt |
749 |
Q |
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| T |
36602052 |
taagctataagtacatttaaagttgaaagtatgtt |
36602086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 750 - 1027
Target Start/End: Original strand, 36602121 - 36602398
Alignment:
| Q |
750 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttcattccatttgatataaaaacaaaataagttcaaaagtgattgtcatcatgagagagtt |
849 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36602121 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttgattccatttgatatgaaaacaaaataagtttaaaagtgattgtcatcatgagagagtt |
36602220 |
T |
|
| Q |
850 |
caaagtatctacaaaccatgaagaacatatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
949 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36602221 |
caaagtatctacaaaccatgaagaacgtatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
36602320 |
T |
|
| Q |
950 |
ttgcagtattaggatgatcaacatgagcaataactcctaactcagatagaaagccagctgtcttttcatctgtgctcc |
1027 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36602321 |
ttgcggtattaggatgatcaacatgagcaataactcctaactcagatagaaagccagctgtcttttcatctgtgctcc |
36602398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 534 - 640
Target Start/End: Complemental strand, 47015643 - 47015537
Alignment:
| Q |
534 |
acctgtggatcaaaattctctgtgagtagtatattttctgccttaatatctctatgaattattcgcctttgacaattctcatgcaaatagagaagaccat |
633 |
Q |
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||||| || ||||| ||||||||||| || | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| | ||| || || |||| |
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| T |
47015643 |
acctgaggctcaaagttctctgtgagaagaacattctctgctttaatatctctatgaatgattcgcctttgacaattctcatgaagatataggagtccat |
47015544 |
T |
|
| Q |
634 |
cagcaat |
640 |
Q |
| |
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||||||| |
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| T |
47015543 |
cagcaat |
47015537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 47016778 - 47016684
Alignment:
| Q |
184 |
atgtttgcatacccgaatgtgccttcaaatgtggacatattatggtgagtcaattgttctggtaaccactttgcaagtccaaaatcacaaatctg |
278 |
Q |
| |
|
|||||||| ||||||||||| |||||| || | || | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47016778 |
atgtttgcgtacccgaatgttccttcagattttgatacattatggtggctacattgttctggtaaccactttgcaagtccaaaatcacaaatctg |
47016684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 47016962 - 47016882
Alignment:
| Q |
19 |
ttatgatctccaaaagtagaacaccgaaagagtaaacatcagttttctcatccactatgccatgcatgcaatattcaggag |
99 |
Q |
| |
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|||| |||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
47016962 |
ttataatctccaaaagtaggacaccaaaagaataaacatcagttttctcgtcgactatgccatgcataagatattcaggag |
47016882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 910 - 1002
Target Start/End: Complemental strand, 47014181 - 47014089
Alignment:
| Q |
910 |
acaagatgcatttctccctctacacaacatccaacaagctttgcagtattaggatgatcaacatgagcaataactcctaactcagatagaaag |
1002 |
Q |
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||||| ||||||||||| ||||||| |||||||| ||| | ||||| |||||||| | | ||||||||||| |||| ||||||||||||| |
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| T |
47014181 |
acaaggtgcatttctccttctacaccacatccaataagtctggcagtgttaggatggtttagatgagcaataatgcctagctcagatagaaag |
47014089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 6987504 - 6987580
Alignment:
| Q |
194 |
acccgaatgtgccttcaaatgtggacatattatggtgagtcaattgttctggtaaccactttgcaagtccaaaatca |
270 |
Q |
| |
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|||| ||||||||||| | | |||| | | ||||||||||| |||| || ||||||||||||||||| ||||||||| |
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| T |
6987504 |
acccaaatgtgccttccactttggagacagtatggtgagtccattgatcaggtaaccactttgcaagcccaaaatca |
6987580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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