View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_15 (Length: 526)
Name: NF9262_low_15
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 11114395 - 11113863
Alignment:
| Q |
1 |
ttctaatatagttgactctctgctgatgcggaataatctaaattcatgcaacagttcaagaaatcacttgctgccaaattttcttcaaaggatcattttc |
100 |
Q |
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| T |
11114395 |
ttctaatatagttgactctctgctgatgcggaataatccaaattcatgcaacagttcaagaaatcacttgctgccaaattttcttcaaaggatcattttc |
11114296 |
T |
|
| Q |
101 |
cgtgaactcacttatttaagtgttgaaattagtcctacctccactgaactaagcaacactacataaggcaacttattggatgagctaccttgacagtttc |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11114295 |
cgtgaactcacttatt-aagtgttgaaattagtcctacctccactgaactaagcaacactacaacaggcaacttattggatgagctaccttgacagtttc |
11114197 |
T |
|
| Q |
201 |
taaactgatttcaacatcaatggccactttctatttccttctttactggtgctacactagactcaacatgt--cagagtatttaacctctaaatgatcaa |
298 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
11114196 |
taaactgatttcaacatcattggccactttctatttccttctttactggtgctacactagactcaacatgtgacaaagtatttaacctctaaatgatcaa |
11114097 |
T |
|
| Q |
299 |
ctgtatcgatactaggtattnnnnnnnntgctgatttcggaggagacatcgaagacacaaacatcactttagtcctaatgtgatttcacaatctggtaaa |
398 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11114096 |
ctgtatcgatactaggtattaaataaaatgctgatttcggaggagacatcgaagacacaaacatcactttagtcctaatgtgatttcacaaactggtaaa |
11113997 |
T |
|
| Q |
399 |
aagcaatctacagttgcaagctcttcaacataggctaagtacaaaac-atag--------------------gctagaaatcagtgttcaattgattgat |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
11113996 |
aagcaatctacagttgcaagctcttcaacataggctaagtacaaaacaatagctacaaccactaatccaacagctagaaatcagtgttcaattgattgat |
11113897 |
T |
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| Q |
478 |
acacctaaaacctactcagacaacttattgatgt |
511 |
Q |
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| T |
11113896 |
acacctaaaacctactcagacaacttattgatgt |
11113863 |
T |
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Back To:
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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 2794812 - 2794861
Alignment:
| Q |
180 |
atgagctaccttgacagtttctaaactgatttcaacatcaatggccactt |
229 |
Q |
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| T |
2794812 |
atgagctaccttggcaggttctaaactgatttcaacatccatggccactt |
2794861 |
T |
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