View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_17 (Length: 509)
Name: NF9262_low_17
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 43168437 - 43167944
Alignment:
| Q |
1 |
ataattgtggctgttgtggatgtagatttgagtacattgctctaattcgaacgccatttaatgaaaaatacagacgtataagaattttaaatgtggttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |
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| T |
43168437 |
ataattgtggctgttgtggatgtagatttgagtacattgctctaattcgaacgccatttagtgataaatacagatgtataagaattttaaatgtggttaa |
43168338 |
T |
|
| Q |
101 |
aagtagt-atatttacagggctctatagttttaaattatatgtgacttatatttacagcgcatattagaccacttttgaatatataataacatacaaaaa |
199 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
43168337 |
aagtagttatatttacagggctctatagttttaaattatatgtgacttatatttacagcgcatattagatcacttttgaatatataataacgtacaaaaa |
43168238 |
T |
|
| Q |
200 |
ttctttcaaccatgcaacgcgcgtatctcattctagttttaataaaattactacctcgctagagagctttcgccactaattctatcaaaggagacagaat |
299 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43168237 |
ttctttccccaatgcaacgcgcgtatctcattctagttttaataaaattactacctcgctagagagctttcgccactaattctatcaaaggagacagaat |
43168138 |
T |
|
| Q |
300 |
ataatgtaccaggaaaactctcataagtgtatctagagtcagacagataagtgatcttgttttccaaacattgtttcagttccataactacattcctcat |
399 |
Q |
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| T |
43168137 |
ataatgtaccaggaaaactctcataagtgtatctagagtcagacagataagtgatcttgttttccaaacattgtttcagttccataactacattcctcat |
43168038 |
T |
|
| Q |
400 |
ggttggtctattcatggaagattgtgctacacaagccattgcagtatccaaagctttagttgcatagttaatatcgaagtcaccctgtaatctg |
493 |
Q |
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| T |
43168037 |
ggttggtctattcatggaagattgtgctacacaagccattgcagtatccaaagctttagttgcatagttaatatcgaagtcaccctgtaatctg |
43167944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 43219736 - 43220215
Alignment:
| Q |
1 |
ataattgtggctgttgtggatgtagatttgagtacattgctctaattcgaacgccatttaatgaaaaatacagacgtataagaattttaaatgtggttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||| ||||||||||||||||||| |
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| T |
43219736 |
ataattgtggctgttgtggatgtagatttgagtacattgctctaatttgaacgccatttagtgcaaaatacagacgtatacgaattttaaatgtggttaa |
43219835 |
T |
|
| Q |
101 |
aagtagt-atatttacagggctctatagttttaaattatatgtgacttatatttacagcgcatattagaccacttttgaatatataataacatacaaaaa |
199 |
Q |
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||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
43219836 |
aagtagttatatttacatggctctatagatttaaattatatgcgacttatatttacagtgcatattagaccgcttttgaatatataataacatacaaaaa |
43219935 |
T |
|
| Q |
200 |
ttctttcaaccatgcaacgcgcgtatctcattctagttttaataaaattactacctcgctagagagctttcgccactaattctatcaaaggagacagaat |
299 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
43219936 |
ttctttcacccatgcaacgcgcgaatctcattctagttttaataaaattactacctcgctatagagctttcaccactaattctatcaaaggagacagaat |
43220035 |
T |
|
| Q |
300 |
ataatgtaccaggaaaactctcataagtgtatctagagtcagacagataagtgatcttgttttccaaacattgtttcagttccataactacattcctcat |
399 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
43220036 |
ataatgtaccaggaaaactctcgtaagtgtatctagagtcagacggataagtgatcttgttttccaaacattgtttcagttccataactacatgcctcat |
43220135 |
T |
|
| Q |
400 |
ggttggtctattcatggaagattgtgctacacaagccattgcagtatccaaagctttagttgcatagttaatatcgaagt |
479 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| |
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| T |
43220136 |
ggttggtctattgatggaagattgtgctacacaagccattgcagtatccaaagttttagttgcatagttagtatcaaagt |
43220215 |
T |
|
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