View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_18 (Length: 504)
Name: NF9262_low_18
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 486
Target Start/End: Original strand, 7110189 - 7110624
Alignment:
| Q |
15 |
aacctgtgttttataatggattgtttgttcttcaagatcgtcatctttagattggcaacgaagagtcaagggtgttggatttggagccttcaccatattg |
114 |
Q |
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| T |
7110189 |
aacctgtgttttataatggattgtatgttcttcaagatcgtcatctttagattggcaacgaagagtcaagggtgttggatttggagccttcaccttattg |
7110288 |
T |
|
| Q |
115 |
ataatataaactgttgtatggcgaagcaagattggtagagttggagcctgcacgttattgttaataatagctatagtctctctag---ccgtgaatgcaa |
211 |
Q |
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| T |
7110289 |
ataatataaactgttgtatggcgaagcaagattggtagagttggagcctgcaccttattgt------tagctacagtctctctagccaccgcgaatgcaa |
7110382 |
T |
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| Q |
212 |
atagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatgtatactcatgtctgcaagacttacatcaatcttaat |
311 |
Q |
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| T |
7110383 |
gtagtatgattaagagtattgaaaactttaagat------------aattgccattgt----tgtatactcatgtctacaagacttacatcaatcttaat |
7110466 |
T |
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| Q |
312 |
ttatacacatgaaaatgggatttgttcaatgacnnnnnnncattttggtcagcaagaataaatattgttttaagaaattgaattatttcccatttgtgat |
411 |
Q |
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| T |
7110467 |
ttatacacatgaaaatgggatttgttcattga-atattttcattttggtcagcaagaataaatattgtttcaaaaaattgaattatttcc---------- |
7110555 |
T |
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| Q |
412 |
ataaatgtgcataaatgaggaaagaagaat---cagctttcggattttgaatgagaaaaaggatatgatttgcaaatc |
486 |
Q |
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| T |
7110556 |
---------cataaatgaggaaagaagaatcagcagctttccgattttgaatgagaaaaaggatatgatttgcaaatc |
7110624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 7116451 - 7116582
Alignment:
| Q |
181 |
atagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatgtatac |
280 |
Q |
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| T |
7116451 |
atagctatagtctctctagccacgaatgcaactagtatgattagtagtattgaaaattttatggtaatt-aacttggaactgccattgttgtatgcaca- |
7116548 |
T |
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| Q |
281 |
tcatgtctgcaagacttacatcaatcttaatttata |
316 |
Q |
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| T |
7116549 |
--atgcctacaagatttacctcaatcttaatttata |
7116582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 17374010 - 17374106
Alignment:
| Q |
179 |
taatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatg |
275 |
Q |
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| T |
17374010 |
taatagctatagtttctctagcttcaaatgagaatagtatgattaggagtatcgaaaatttgaaggtaattgtacttggaactgccattgttgtatg |
17374106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 316
Target Start/End: Complemental strand, 31117808 - 31117675
Alignment:
| Q |
180 |
aatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatgtata |
279 |
Q |
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|||||| ||||||||||||||| ||||||| ||| ||||||| ||||||||| | |||||||| |||| |||||||||||||||||||||||| | | |
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| T |
31117808 |
aatagcgatagtctctctagcctcaaatgcaagtagcatgattaggagtattgatgattttaaggtgattgcacttggaattgccattgttgtatgcaca |
31117709 |
T |
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| Q |
280 |
ctcatgtctgcaagacttacatcaatcttaatttata |
316 |
Q |
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| T |
31117708 |
---atgcctacaagacatacatcaatcttaatttata |
31117675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 205 - 316
Target Start/End: Complemental strand, 6606641 - 6606533
Alignment:
| Q |
205 |
aatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatgtatactcatgtctgcaagacttacatcaa |
304 |
Q |
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||||||| |||| |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| | | ||| ||||||||||| || ||| |
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| T |
6606641 |
aatgcaagtagtgtgattatgagtattgaaaattttaaggtaattgaacttggaactgccattgttgtatgcaca---atgcctgcaagacttgcaacaa |
6606545 |
T |
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| Q |
305 |
tcttaatttata |
316 |
Q |
| |
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| |||||||||| |
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| T |
6606544 |
tattaatttata |
6606533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 6631798 - 6631704
Alignment:
| Q |
181 |
atagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatg |
275 |
Q |
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| T |
6631798 |
atagctatagtatcactagcctcaaatgcaagtagtatgattatgagtattgaaaattttaagctaattgaatttggaactgtcattgttgtatg |
6631704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 6615728 - 6615652
Alignment:
| Q |
205 |
aatgcaaatagta---tgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatgtat |
278 |
Q |
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| T |
6615728 |
aatgcaaatagtaccatgattaagaatattgaaaattttaaggtaattggacttgtaacttccattgttgtatgtat |
6615652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 9036849 - 9036816
Alignment:
| Q |
51 |
atcgtcatctttagattggcaacgaagagtcaag |
84 |
Q |
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| T |
9036849 |
atcgtcatctttagattggcaacgaagagtcaag |
9036816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 6613116 - 6613025
Alignment:
| Q |
183 |
agctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtat |
274 |
Q |
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| T |
6613116 |
agctatagtctctctggcctcaaatgcaagtagtgtagttaggagtattgaacattttaagataattgtacttggagttgtcattgttgtat |
6613025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 596412 - 596508
Alignment:
| Q |
179 |
taatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatg |
275 |
Q |
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| T |
596412 |
taatagctatagtttctctagcttcaaatgagaatagtatgattaggagtatcgataatttgaaggtaattgtacttggaactgccattgttgtatg |
596508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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