View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9262_low_20 (Length: 502)

Name: NF9262_low_20
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9262_low_20
NF9262_low_20
[»] chr8 (1 HSPs)
chr8 (19-502)||(28181671-28182160)


Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 28181671 - 28182160
Alignment:
Q  19 agacagggcgtggaacaataatcgaacgctccttcgaatggacaacctctttagtaaacgagtcacaataagaggaccgtactgaaagagcgtgggtatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28181671 agacagggcgtggaacaataatcgaacgctccttcgaatggacaacctctttagtaaacgagtcacaataagaggaccgtactgaaagagcgtgggtatg 28181770  T
Q  119 ggacccatgtgatgaaggtgcttttaactcaacaagcaactctctctcctccgccgcgtgaagatctcccattgtggcaaatccgggcaagagtttagct 218  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  28181771 gaacccatgtgatgaaggtacttttaactcaacaagcaactctctctcctccgccgcgtgaagatctcccattgtggcaaatcctggcaagagtttagcg 28181870  T
Q  219 gtgaaacttgactctgagccgttttggaattcaaatttgatgtcttgagcaaccacacacaacaatttaccgatacgttccgaaaacgcgccgtcatgaa 318  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||| | ||| |||||||||||||||||||    
T  28181871 gtgaaacttgactctgacccgttttggaattcaaatttgatgtcttgagcaaccacgcgcaacaaattaccgatgcattctgaaaacgcgccgtcatgaa 28181970  T
Q  319 gcgcgtgtgagtagttgagtgcgtggactggaatttccaaattaggcaagcgcgtggaagataatctcctatcttcatga------ccatttgtaagaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||    
T  28181971 gcgcgtgtgagtagttgagtgcgtggactggaatttccaaattaggcaagcgcgtggaagataatctcctatcttcatgaccatttccatttgtaagaag 28182070  T
Q  413 tataattttggcaacaggattcttctgtctccgatcttctagaatcttcgccgctttcttcaccgcctccttcctcgccggaactccgtc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  28182071 tataattttggcaacaggattcttctgtctccgatcttctagaatcttcgcggctttcttcaccgcctccttcctcgccggaaatccgtc 28182160  T

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