View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_22 (Length: 489)
Name: NF9262_low_22
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 129 - 479
Target Start/End: Complemental strand, 3091181 - 3090829
Alignment:
| Q |
129 |
catgacattacttgacccaaaacaaatgatatttgtacataaatagtttaataagcaataaattaaaagnnnnnnn--ggactaaaccaaaacttactat |
226 |
Q |
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| T |
3091181 |
catgacattacttgacccaaaacaaatgatatttgtacataaatagtttaataagcaataaattaaaagaaaaaaaaaggactaaaccaaaacttactat |
3091082 |
T |
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| Q |
227 |
caactttatatgtaggtataaatcattagatctagagttgtgaccatagtagacttactcctgaccgtcttgagagaatggtttatttttgtgttacata |
326 |
Q |
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| T |
3091081 |
caactttatatgtaggtataaatcattagatctagagttgtgaccatagtagacttactcctgaccgtcttgagagaatggtttatttttgtgttacata |
3090982 |
T |
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| Q |
327 |
ccttacgtagcgagggcttgcacgagtatagaagccggcattcaaacaacttccaccacctagaacacgagctcttgaattaataacaccatcttcagaa |
426 |
Q |
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| T |
3090981 |
ccttacgtagcgagggcttgcacgagtatagaagccggcattcaaacaacttccaccacctagaacacgagctcttgaattaataacaccatcttcagaa |
3090882 |
T |
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| Q |
427 |
atgaatcgttgagcaggagaggaaggagatggatcagaaagtgcaacaccaaa |
479 |
Q |
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| T |
3090881 |
atgaatcgttgagcaggagaggaaggagatggatcagaaagtgcaacaccaaa |
3090829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 295 - 477
Target Start/End: Complemental strand, 3082653 - 3082475
Alignment:
| Q |
295 |
cttgagagaatggtttatttttgtgttacataccttacgtagcgagggcttgcacgagtatagaagccggcattcaaacaacttccaccacctagaacac |
394 |
Q |
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| T |
3082653 |
cttgaaagaatagtttatttttgtgttac----cttacatagcgagggcttgcacgagtgtagaagccagcattcaaacaacttccaccacctagaacac |
3082558 |
T |
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| Q |
395 |
gagctcttgaattaataacaccatcttcagaaatgaatcgttgagcaggagaggaaggagatggatcagaaagtgcaacacca |
477 |
Q |
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| T |
3082557 |
gagctcttgaattaataacaccatcttcagaaatgaatcgttgagcaggagaagaaggagatgtatcagagagtggaacacca |
3082475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 3091292 - 3091246
Alignment:
| Q |
18 |
aataaatataattcttatttatacaagtgtaccatgaatttctctat |
64 |
Q |
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| T |
3091292 |
aataaatataattcttatttatacaagtataccatgaatttctctat |
3091246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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