View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9262_low_29 (Length: 464)

Name: NF9262_low_29
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9262_low_29
NF9262_low_29
[»] chr4 (6 HSPs)
chr4 (154-443)||(55203211-55203500)
chr4 (14-153)||(55203569-55203708)
chr4 (205-276)||(55205844-55205915)
chr4 (252-308)||(10032286-10032342)
chr4 (258-308)||(1856676-1856726)
chr4 (80-132)||(15995475-15995527)
[»] chr2 (3 HSPs)
chr2 (26-148)||(10257972-10258096)
chr2 (66-153)||(33669249-33669338)
chr2 (252-308)||(18259213-18259270)
[»] chr1 (7 HSPs)
chr1 (46-124)||(48990561-48990641)
chr1 (46-143)||(19874187-19874285)
chr1 (46-114)||(25491655-25491725)
chr1 (255-304)||(48990904-48990953)
chr1 (255-300)||(25491998-25492043)
chr1 (255-304)||(48986045-48986094)
chr1 (255-308)||(52433030-52433083)
[»] chr7 (5 HSPs)
chr7 (46-114)||(46168977-46169047)
chr7 (370-438)||(46466492-46466560)
chr7 (255-304)||(46164460-46164509)
chr7 (206-279)||(46513512-46513583)
chr7 (255-304)||(46169318-46169367)
[»] chr3 (2 HSPs)
chr3 (250-285)||(34374786-34374821)
chr3 (250-308)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (255-308)||(11167-11221)
[»] chr6 (1 HSPs)
chr6 (252-308)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 154 - 443
Target Start/End: Complemental strand, 55203500 - 55203211
Alignment:
Q  154 ggcggcgccggcaggaggcatggcgatgagtgagatacgcttgagaaagaggaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  55203500 ggcggcgccggcaggaggcatggcgatgagtgagatacgcttgagaaagaggaagcgcgtgtttctcctctattttgttttttaattaaaaaa-gctgat 55203402  T
Q  254 gttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattcaataaacgaat-cacacggtcgccttctccctgaaataatcctatt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  55203401 gttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattcaataaacgaattcacacggtcgccttctccctgaaatgatcctatt 55203302  T
Q  353 ctgtgaaggtctccgtcgcaatcttcaatcccctaacgaattcatgcccagtgtaactctccgttttcttagccgcatcaatgaatacaag 443  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  55203301 ctgtgaaggtctccgtcgcaatattcaatcccctaacgaattcatgcgcggtgtaactctccgttttcttagccgcatcaatgaatacaag 55203211  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 55203708 - 55203569
Alignment:
Q  14 agagacataattatattttacagtcttgtagttgttgtcatgagtatttagaaattggcaagggtaaaagtgggtaaatgaatcgtctggtgtggaagag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203708 agagacataattatattttacagtcttgtagttgttgtcatgagtatttagaaattggcaagggtaaaagtgggtaaatgaatcgtctggtgtggaagag 55203609  T
Q  114 aggagaaacaatggtggtttggtacgtgagagcggcagtg 153  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  55203608 aagagaaacaatggtggtttggtacgtgagagcggcagtg 55203569  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 55205844 - 55205915
Alignment:
Q  205 gaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaa 276  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  55205844 gaagcgcgtgtttctcctctattttgttttttaattaaaaaaaactgatgttttgtttatttttaatctgaa 55205915  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 10032286 - 10032342
Alignment:
Q  252 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 308  Q
    ||||||||||||||||||||||||| |||||||||| ||| |  |||||||||||||    
T  10032286 atgttttgtttatttttaatctgaatcattgaatccttttttgtcacatgtcattca 10032342  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 1856676 - 1856726
Alignment:
Q  258 tgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 308  Q
    |||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  1856676 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattca 1856726  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 15995475 - 15995527
Alignment:
Q  80 aaagtgggtaaatgaatcgtctggtgtggaagagaggagaaacaatggtggtt 132  Q
    ||||||||||||||||  | ||||||||||||||| ||||| ||| |||||||    
T  15995475 aaagtgggtaaatgaaaagactggtgtggaagagaagagaagcaacggtggtt 15995527  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 10258096 - 10257972
Alignment:
Q  26 atattttacagtcttgtagttgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagagaggagaaaca 123  Q
    ||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||  |||||||||  |||| ||||||||| ||| | ||    
T  10258096 atattttgcagtcttgtagttgttgttatgaatacttagaaattggcaagggtaaaagtgggtaagaatgaatcgattggtttggaagagaagagcagca 10257997  T
Q  124 atggtggtttggtacgtgagagcgg 148  Q
    | |||||||||||| ||||| ||||    
T  10257996 aaggtggtttggtatgtgagggcgg 10257972  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 33669249 - 33669338
Alignment:
Q  66 aattggcaagggtaaaagtgggtaa--atgaatcgtctggtgtggaagagaggagaaacaatggtggtttggtacgtgagagcggcagtg 153  Q
    |||||| ||||||||||||||||||  |||||||| | ||||||||||||| ||| |||||| | ||||||||| ||||| || ||||||    
T  33669249 aattggtaagggtaaaagtgggtaagaatgaatcgaccggtgtggaagagaagagcaacaatagcggtttggtatgtgagggcagcagtg 33669338  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 18259213 - 18259270
Alignment:
Q  252 atgttttgtttatttttaa-tctgaaccattgaatccctttcttccacatgtcattca 308  Q
    ||||||||||||||||||| | ||||||||||||||  ||| | ||||||||||||||    
T  18259213 atgttttgtttatttttaaatatgaaccattgaatctttttttgccacatgtcattca 18259270  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 48990561 - 48990641
Alignment:
Q  46 tgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagagaggagaaacaa 124  Q
    ||||||||||| |||||||||||||||||||||||| |||||||  | ||||||| ||||||||||||||| ||| |||||    
T  48990561 tgttgtcatgaatatttagaaattggcaagggtaaatgtgggtaagagtgaatcgactggtgtggaagagaagagcaacaa 48990641  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 19874187 - 19874285
Alignment:
Q  46 tgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagagaggagaaacaatggtggtttggtacgtgag 143  Q
    ||||||||||| |||||||||||||||||| |||||||||||||  | ||||||  |||||||||||||||  || ||||| |||||||| ||| |||||    
T  19874187 tgttgtcatgaatatttagaaattggcaagcgtaaaagtgggtaagagtgaatcaactggtgtggaagagaatagcaacaa-ggtggtttagtatgtgag 19874285  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 25491655 - 25491725
Alignment:
Q  46 tgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagaga 114  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||  | ||||||| |||||||||||||||    
T  25491655 tgttgtcatgaatatttagaaattgacaagggtaaatgtgggtaagagtgaatcgactggtgtggaagaga 25491725  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 48990904 - 48990953
Alignment:
Q  255 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 304  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  48990904 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtca 48990953  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 25491998 - 25492043
Alignment:
Q  255 ttttgtttatttttaatctgaaccattgaatccctttcttccacat 300  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||    
T  25491998 ttttgtttatttttaatctgaaccattgaatccatttttgccacat 25492043  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 48986094 - 48986045
Alignment:
Q  255 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 304  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||||||    
T  48986094 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 48986045  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 52433083 - 52433030
Alignment:
Q  255 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 308  Q
    ||||||||||||||||||||||||||||||| | ||| | |||| |||||||||    
T  52433083 ttttgtttatttttaatctgaaccattgaattcatttgtgccacgtgtcattca 52433030  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 46168977 - 46169047
Alignment:
Q  46 tgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagaga 114  Q
    ||||||||||| |||||||||||||||||||||||| |||||||  | ||||||| |||||||||||||||    
T  46168977 tgttgtcatgaatatttagaaattggcaagggtaaatgtgggtaagagtgaatcgactggtgtggaagaga 46169047  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 46466492 - 46466560
Alignment:
Q  370 gcaatcttcaatcccctaacgaattcatgcccagtgtaactctccgttttcttagccgcatcaatgaat 438  Q
    |||||||||||| ||||||||||||||| | |||||| ||||| ||||||||| |||| ||||||||||    
T  46466492 gcaatcttcaatgccctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaat 46466560  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 46164509 - 46164460
Alignment:
Q  255 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 304  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  46164509 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtca 46164460  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 46513512 - 46513583
Alignment:
Q  206 aagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaacca 279  Q
    ||||||||||| |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||    
T  46513512 aagcgcgtgtt-ctcctctatttttttttttaattaaaaaa-gctgatgttttgtttatttttaatctgaacca 46513583  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 46169318 - 46169367
Alignment:
Q  255 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 304  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||||||    
T  46169318 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 46169367  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 285
Target Start/End: Original strand, 34374786 - 34374821
Alignment:
Q  250 tgatgttttgtttatttttaatctgaaccattgaat 285  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374786 tgatgttttgtttatttttaatctgaaccattgaat 34374821  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 34374065 - 34374007
Alignment:
Q  250 tgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 308  Q
    ||||||||| |||||||||||||| ||||||||||||  ||| | ||||||||||||||    
T  34374065 tgatgttttatttatttttaatctaaaccattgaatcattttttgccacatgtcattca 34374007  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 11221 - 11167
Alignment:
Q  255 ttttgtttatttttaatctgaaccattgaatccctttctt-ccacatgtcattca 308  Q
    ||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  11221 ttttgattatttttaatctgaaccattgaatcctttttttaccacatgtcattca 11167  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 6356377 - 6356433
Alignment:
Q  252 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 308  Q
    |||||||| ||||||| ||||||||| ||||||||  ||| | ||||||||||||||    
T  6356377 atgttttgattattttaaatctgaacaattgaatcgatttttaccacatgtcattca 6356433  T

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