View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_3 (Length: 826)
Name: NF9262_low_3
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 124 - 807
Target Start/End: Original strand, 39918352 - 39919035
Alignment:
| Q |
124 |
ttccaatcatgtccctgttttcacaaaactagcctacgttttaggcttaagagtttctccaaatcatagaagaatgggaatagggctaaaactggtagag |
223 |
Q |
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| T |
39918352 |
ttccaatcatgtccctgttttcacaaaactagcctacgttttaggcttaagagtttctccaaatcatagaagaatgggaatagggctaaaactggtagag |
39918451 |
T |
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| Q |
224 |
aaaatggaacaatggtttcgtgaaaatggtgctgagtattcttacatggctactgaaaacgacaacgttgcatcagttaaacttttcaccgacaaatgcg |
323 |
Q |
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| T |
39918452 |
aaaatggaacaatggtttcgtgaaaatggtgctgagtattcttacatggctactgaaaacgataacgttgcatcagttaaacttttcaccgacaaatgcg |
39918551 |
T |
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| Q |
324 |
gttactcaaagttccgtacaccgtcaatccttgttaaccccgttttcaaacaccgtctcaaaacatcatcgtccaaaacaacaatccttaaactcacacc |
423 |
Q |
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| T |
39918552 |
gttactcaaagttccgtacaccgtcaatccttgttaaccccgttttcaaacaccgtctcaaaacatcatcgtccaaaacaacaatccttaaactcacacc |
39918651 |
T |
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| Q |
424 |
aaacgacgctgaaacactttaccgttacaaattctccaccactgagttttttcctcgtgacattgattctgttttgaaaaacaaactcaccctcggaacc |
523 |
Q |
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| T |
39918652 |
aaacgacgctgaaacactttaccgttacaaattctccaccactgagttttttcctcgtgacattgattctgttttgaaaaacaaactcaccctcggaacc |
39918751 |
T |
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| Q |
524 |
ttcttagccgttccaagagacggaaaatatggggccggatcatataattggtccggctccgaaagctttttaatggacccaccgagttcgtgggctttag |
623 |
Q |
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| T |
39918752 |
ttcttagccattccaagagacggaaaatatggggccggatcagataactggtccggctccgaaagctttttaatggacccaccgagttcgtgggctttag |
39918851 |
T |
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| Q |
624 |
taagtgtttggaactgcaaagacgtgtttacccttgaagtaaaaggcgcatcgcgcctgagacgtgtgttagcaaaaacaactcgactgatagacaaggc |
723 |
Q |
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| T |
39918852 |
taagtgtttggaactgcaaagacgtgtttacccttgaagtaaaaggcgcatcgcgcgtgagacgtgtgttagcaaaaacaactcgactgatagacaaggc |
39918951 |
T |
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| Q |
724 |
tttaccttggttaaaattaccttcgattccgaattttttcaaaccgtttgggtttcatctaatgtatggaattggtggggaagg |
807 |
Q |
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| T |
39918952 |
tttaccttggttaaaattaccttcgattccgaattttttcaaaccgtttgggtttcatctaatgtatggaattggtggggaagg |
39919035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 39918241 - 39918303
Alignment:
| Q |
13 |
agcagagataggcaatgagacagtcggaatgatacgaggttgtatcaaaaccgttacatgcgg |
75 |
Q |
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| T |
39918241 |
agcagagataggcaatgagacagtcggaatgatacgaggttgtatcaaaaccgttacatgcgg |
39918303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 5545517 - 5545448
Alignment:
| Q |
299 |
gttaaacttttcaccgacaaatgcggttactcaaagttccgtacaccgtcaatccttgttaaccccgttt |
368 |
Q |
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| T |
5545517 |
gttaaactcttcactgaaaaatgcggttatacaaagttccgtacaccgtcaattctcgtcaaccccgttt |
5545448 |
T |
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