View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_31 (Length: 456)
Name: NF9262_low_31
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 12552684 - 12553113
Alignment:
| Q |
19 |
agctttaatccattcaatttgtttttgaatggaacaaacacaattcaaactaacgagccattaggtttgagtggtggtgaagaatatgctatgaacccta |
118 |
Q |
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| T |
12552684 |
agctttaatccattcaatttgtttttgaatggaacaaacacaattcaaactaatgagccattaggtttgagtggtggtgaagaatatgctatgaacccta |
12552783 |
T |
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| Q |
119 |
gcttatactcttatggacaaagtgagtcttcaaagcaggatatttcaaaaggtgaatcaagtttacaagatcttgattatagcaaaatgagaagcatttc |
218 |
Q |
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| T |
12552784 |
gtttatactcttatggacaaagtgagtcttcaaagcaggatatttcaaaaggtgaatcaagtttacaagatcttgattatagcaaaatgagaagcatttc |
12552883 |
T |
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| Q |
219 |
atgtgtaaatcaagaagaaaatctacttcctgctttggttgcttcctctcctagaactggaatcttcaatcaaatcgaaaatgaccgcaacaaagctcaa |
318 |
Q |
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| T |
12552884 |
atgtgtaaatcaagaagaaaatctacttcctgctttggttgcttcctctcctagaattggaatcttcaatcaaatcgaaaatgaccgcaacaaagctcaa |
12552983 |
T |
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| Q |
319 |
atgtccatcgatcactcaccttcaaatgcaatctttgatgattgggagaagttccttgacgatgaatcaagtggtggttcctactggaaagagcttttag |
418 |
Q |
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| T |
12552984 |
atgtccatcgatcactcaccttcaaatgcaatctttgatgattgggagaagttccttgacgatgaatcaagtggtggttcctactggaaagagcttttag |
12553083 |
T |
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| Q |
419 |
agtaagcaatcacaaatttaatagtattat |
448 |
Q |
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| T |
12553084 |
agtaagcaatcacaaatttaatagtattat |
12553113 |
T |
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