View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_33 (Length: 445)
Name: NF9262_low_33
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 3321680 - 3321984
Alignment:
| Q |
15 |
cagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaaggagat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3321680 |
cagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaaggagat |
3321779 |
T |
|
| Q |
115 |
gagtttcattgagatgaaaatgattattgtagcaatactgttgaattatcacattcatgtggttgaaggtcaagtagtaaagccaagtatttctttaatc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3321780 |
gagtttcattgagatgaaaatgattattgtagcaatactgttgaattatcatattcatgtggttgaaggtcaagtagtaaagccaagtatttctttaatc |
3321879 |
T |
|
| Q |
215 |
ctacacatgaaacatggcttgaaggttatggtgnnnnnnncaagtatttgaggatctaattaggagatattttgaaaataactaaattgtgttcagaaac |
314 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
3321880 |
ctacacatgaaacatggcttgaaggttatggtgaaaaaaataagtatttgaggatcta---aggagatattttgaaaataactaaattgtgttctgaaac |
3321976 |
T |
|
| Q |
315 |
tacatgca |
322 |
Q |
| |
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|||||||| |
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|
| T |
3321977 |
tacatgca |
3321984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 3322048 - 3322088
Alignment:
| Q |
387 |
ccaataaaagagtataaatatattatctatgttattgttat |
427 |
Q |
| |
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| T |
3322048 |
ccaataaaagagtataaatatattatctatgttattgttat |
3322088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 12175857 - 12175630
Alignment:
| Q |
15 |
cagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaaggagat |
114 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12175857 |
cagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatat |
12175758 |
T |
|
| Q |
115 |
gagtttcattgagatgaaaatgattattgtagcaatactgttgaattatcacattcatgtggttgaaggtcaagtagtaaagccaagtatttctttaatc |
214 |
Q |
| |
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|| |||||||||||||||||| || | |||||||| ||||||||||||||||||| ||||| |||| ||| ||| |||||| ||||| | | |
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| T |
12175757 |
aagcttcattgagatgaaaatggttgctatagcaatattgttgaattatcacattcaagtggtggaagatcatcccataatcccaagtctttctgttgtt |
12175658 |
T |
|
| Q |
215 |
ctacacatgaaacatggcttgaaggtta |
242 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
12175657 |
ttacacatgaaacatggcttgaaggtta |
12175630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 12164332 - 12164105
Alignment:
| Q |
15 |
cagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaaggagat |
114 |
Q |
| |
|
||||||||||||||||| | ||||||| ||| || |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
12164332 |
cagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaatgctggaccaaggagttgtttgggtaaggatat |
12164233 |
T |
|
| Q |
115 |
gagtttcattgagatgaaaatgattattgtagcaatactgttgaattatcacattcatgtggttgaaggtcaagtagtaaagccaagtatttctttaatc |
214 |
Q |
| |
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|| |||||||||||||||||| || | |||||||| ||||||||||||||||||| ||||| |||| ||| ||| |||||| ||||| | || |
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| T |
12164232 |
aagcttcattgagatgaaaatggttgctatagcaatattgttgaattatcacattcaagtggtggaagatcatcccataatcccaagtctttctgttgtc |
12164133 |
T |
|
| Q |
215 |
ctacacatgaaacatggcttgaaggtta |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
12164132 |
ttacacatgaaacatggcttgaaggtta |
12164105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 36668184 - 36668016
Alignment:
| Q |
15 |
cagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaaggagat |
114 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
36668184 |
cagagaggtgggtttctaagaaaggagggacaattcatgtaccttcttacaagttcattgctttcaatgctggaccaaggagtcgtttgggtaaggatat |
36668085 |
T |
|
| Q |
115 |
gagtttcattgagatgaaaatgattattgtagcaatactgttgaattatcacattcatgtggttgaagg |
183 |
Q |
| |
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|| ||||||||| |||| ||| || | |||||||| ||||||| ||||||||||| ||||| ||||| |
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| T |
36668084 |
aagcttcattgagttgaagatggttgctatagcaatattgttgaactatcacattcaagtggtggaagg |
36668016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 13065381 - 13065439
Alignment:
| Q |
50 |
catgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaa |
108 |
Q |
| |
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|||||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||| |
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| T |
13065381 |
catgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaa |
13065439 |
T |
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