View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9262_low_41 (Length: 381)

Name: NF9262_low_41
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9262_low_41
NF9262_low_41
[»] chr5 (1 HSPs)
chr5 (13-364)||(1204427-1204788)
[»] chr3 (6 HSPs)
chr3 (13-199)||(30858908-30859099)
chr3 (13-195)||(39193384-39193568)
chr3 (136-178)||(530022-530064)
chr3 (143-195)||(38866730-38866782)
chr3 (13-92)||(38866860-38866941)
chr3 (137-178)||(485966-486007)
[»] chr6 (5 HSPs)
chr6 (34-197)||(34605594-34605763)
chr6 (34-197)||(34726871-34727040)
chr6 (34-197)||(33465996-33466165)
chr6 (132-197)||(3048089-3048154)
chr6 (137-197)||(34729354-34729414)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 1204788 - 1204427
Alignment:
Q  13 tttggtgttttgcacaatacaatatgttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaattgagtact 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1204788 tttgttgttttgcacaatacaatatgttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaattgagtact 1204689  T
Q  113 cctggtataacttttactccttactcacacgtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaaggaagtatttg------ 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  1204688 cctggtataacttttactccttactcacacgtaaggctggttagttgtgatggacatcttttagtgcttaattttatgtccaaggaagtatttgatgctt 1204589  T
Q  207 --aaaattgacttctcaaccccggaattgtggggttatgnnnnnnnt--tgtgtatgtcatcgatcttccatgtcacaaatacatagttaataaaggagc 302  Q
      |||||||||||||||||||||||||||||||||||||       |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1204588 acaaaattgacttctcaaccccggaattgtggggttatgaaaaaaattgtgtgtatgtcatcgatcttccatgtcacaaatacatagttaataaaggagc 1204489  T
Q  303 tggtaataaaatgccagaactcgttctaccttttgtaattgctgataatccaagaacatatt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1204488 tggtaataaaatgccagaactcgttctaccttttgtaattgctgataatccaagaacatatt 1204427  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 30859099 - 30858908
Alignment:
Q  13 tttggtgttttgcacaatacaatat--gttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaattga--- 107  Q
    |||| ||||||||||||||| ||||  ||||||| |||| |||| |||||||||||  | |||||||  ||||||||||||| | ||||  || |||       
T  30859099 tttgttgttttgcacaataccatatatgttgtcactgacaaggctaacatagggatacttagcttgaactctgcaaatataaatgttttacaactgaaga 30859000  T
Q  108 gtactcctggtataacttttactccttactcacacgtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaaggaa 199  Q
    ||||||||| | ||| || |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  30858999 gtactcctgatgtaatttctacttcttactcacatgtaaggttggttagttgtgatggacatcttctagtgcttaattttatatccaaggaa 30858908  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 39193568 - 39193384
Alignment:
Q  13 tttggtgttttgcacaatacaatat--gttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaatt---ga 107  Q
    |||| ||||||||||||||| ||||  ||||||| | || | ||||||||||||||  ||| ||||| |||||| ||||||| |||||| |||||   ||    
T  39193568 tttgttgttttgcacaataccatatacgttgtcactaacaaagccaacatagggatactcaacttgaattctgcgaatataatttttttagaattcaaga 39193469  T
Q  108 gtactcctggtataacttttactccttactcacacgtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaa 195  Q
    |||||| | || ||||   | || ||   |||||||||||| ||||||| ||||||| | ||||||||||||| ||| ||| ||||||    
T  39193468 gtactcgtagtgtaac---tcctgctatgtcacacgtaaggctggttagatgtgatgaatatcttttagtgctgaatattaggtccaa 39193384  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 530064 - 530022
Alignment:
Q  136 ctcacacgtaaggttggttagttgtgatggacatcttttagtg 178  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  530064 ctcacacctaaggttggttagttgtgatggacaacttttagtg 530022  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 38866782 - 38866730
Alignment:
Q  143 gtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaa 195  Q
    ||||||||| ||| |||||||| ||||||||||||||| ||||||| ||||||    
T  38866782 gtaaggttgcttaattgtgatgaacatcttttagtgctaaattttacgtccaa 38866730  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 38866941 - 38866860
Alignment:
Q  13 tttggtgttttgcacaatacaatat--gttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataa 92  Q
    |||| ||||||||||||||| ||||  ||| ||| |||| |||||||||| |||||  |||| |||| ||||||||||||||    
T  38866941 tttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggatactcagtttgaattctgcaaatataa 38866860  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 486007 - 485966
Alignment:
Q  137 tcacacgtaaggttggttagttgtgatggacatcttttagtg 178  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  486007 tcacacctaaggttggtttgttgtgatggacaacttttagtg 485966  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 34605594 - 34605763
Alignment:
Q  34 atatgttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaatt---gagtactcctggtataacttttact 130  Q
    ||||||||||| |||| |||||| |||||||||  |||||||||  | ||||||||||| |||||| ||| |   ||||||||||||| |||||| || |    
T  34605594 atatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaacttctagt 34605693  T
Q  131 cctta---ctcacacgtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaagg 197  Q
    | |||    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  34605694 cgttattggtcacacgtagggttggttagttgtgatggatatcttttagtgcttaattttatgtcaaagg 34605763  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 34726871 - 34727040
Alignment:
Q  34 atatgttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaatt---gagtactcctggtataacttttact 130  Q
    ||||||||||| |||| |||||| |||||||||  |||||||||  | ||||||||||| |||||| ||| |   ||||||||||||| |||||| || |    
T  34726871 atatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaacttctagt 34726970  T
Q  131 cctta---ctcacacgtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaagg 197  Q
    | |||    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  34726971 cgttattggtcacacgtagggttggttagttgtgatggatatcttttagtgcttaattttatgtcaaagg 34727040  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 33466165 - 33465996
Alignment:
Q  34 atatgttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaattgag---tactcctggtataacttttact 130  Q
    ||||||||||| |||| ||||||||||||||||  |||||||||  | ||||||||||| |||||| ||| |||    |||||||| | |||||| |||     
T  33466165 atatgttgtcactgacaaggccaacatagggatgctcagcttgaaatatgcaaatataaattttttagaactgaagaatactcctgttgtaacttctacc 33466066  T
Q  131 c---cttactcacacgtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaagg 197  Q
        ||| ||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||| ||||    
T  33466065 aaatcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaagg 33465996  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 3048089 - 3048154
Alignment:
Q  132 cttactcacacgtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaagg 197  Q
    ||||| |||||||  ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  3048089 cttacgcacacgtcgggttggttagttgtgatggacatcttttagtgcttcatattatgtccaagg 3048154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 34729354 - 34729414
Alignment:
Q  137 tcacacgtaaggttggttagttgtgatggacatcttttagtgcttaattttatgtccaagg 197  Q
    ||||||||||||||| ||||||||| |||| |||||| |||||||||| ||||||| ||||    
T  34729354 tcacacgtaaggttgattagttgtgttggatatctttgagtgcttaatgttatgtcaaagg 34729414  T

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