View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_46 (Length: 365)
Name: NF9262_low_46
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 7465370 - 7465013
Alignment:
| Q |
1 |
gcaacctacaaaccaaagtcggcaaattacacctctagccgactgatttatatggtttgccaagcaattcctcaacaaatgcatatgaaagtacatacat |
100 |
Q |
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| T |
7465370 |
gcaacctacacaccaaagtcggcaaattacacctctagcctactgatttatatggtttgccaagcaattcctcaacaaatgcatatgaaagtacatacat |
7465271 |
T |
|
| Q |
101 |
tcgaagcgaccaaatacacgaccaatctcctggaactttaagctcatcccaattcaatagtctctccatacacacgctataagcactcttcactgtataa |
200 |
Q |
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| T |
7465270 |
tcgaagcgaccaaatacacgaccaatctcctggaactttaagctcatcccaattcaacagtctctccatacacacgctataagcactcttcaccgtataa |
7465171 |
T |
|
| Q |
201 |
tttccatgcttattacaacgtcaaataatttggtcccttttatagacatttagtagcggaattcatataatatcctctgaatctccgtcataaaaattcc |
300 |
Q |
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| T |
7465170 |
tttccatgcttattaaaacgtcaaataatttagtcccttttatagacatctagtagcggaattcatataatatcctctgaatctccgtcataaaaattcc |
7465071 |
T |
|
| Q |
301 |
tccaccaactgttcatttcactttccattattttggtctgtaagttgatgaaccacca |
358 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7465070 |
tccaccaattgttcatttcacgttccattattttggtctgtaagttgatgaaccacca |
7465013 |
T |
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