View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9262_low_49 (Length: 333)
Name: NF9262_low_49
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 2489769 - 2489453
Alignment:
| Q |
1 |
catttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2489769 |
catttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcc |
2489670 |
T |
|
| Q |
101 |
caaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttcttgaagtgaatctttagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2489669 |
caaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttcttgaagtgaatctttagt |
2489570 |
T |
|
| Q |
201 |
ctcgtctaaggcaccaatgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttctcaaactcattatcaggaacttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2489569 |
ctcgtctaaggcaccaatgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttctcaaactcattatcaggaacttcc |
2489470 |
T |
|
| Q |
301 |
tgcaagtgaagagattg |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2489469 |
tgcaagtgaagagattg |
2489453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 41591217 - 41591529
Alignment:
| Q |
1 |
catttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| || |||||||| |||| |
|
|
| T |
41591217 |
catttagaagtgatggtagacatggacacattaatgaaacttgctccagcttcctttgcaatggccttcgccagcattgttttcccagttccaggaggcc |
41591316 |
T |
|
| Q |
101 |
caaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttcttgaagtgaatctttagt |
200 |
Q |
| |
|
|||||||||||||||| | ||| || |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
41591317 |
caaatagcaatattccccgacatggttttagaagtcctccagtgaaaaggtctggccttcgaagaggaagcattactagttcttgaagtgattcttttgt |
41591416 |
T |
|
| Q |
201 |
ctcgtctaaggcaccaatgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttctcaaactcattatc---aggaact |
297 |
Q |
| |
|
|| |||||||||||||| || |||||||| || |||| ||||||||||| || |||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
41591417 |
ttcttctaaggcaccaatatcagagaatgtgacatcaatctcatttgctggtataacttcaggccttattcgcttctcaaattcattatcaggaggaact |
41591516 |
T |
|
| Q |
298 |
tcctgcaagtgaa |
310 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41591517 |
tcctgcaagtgaa |
41591529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 11094616 - 11094921
Alignment:
| Q |
1 |
catttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcc |
100 |
Q |
| |
|
||||| |||||||| || ||||| || || ||||||||||||||||| || || || ||||| |||||||| |||||||||||||| || |||||||| | |
|
|
| T |
11094616 |
cattttgaagtgatcgtggacatcgagacgttaatgaaacttgctcctgcttcattcgcaatcgcctttgctagcattgtttttccggtaccaggtggac |
11094715 |
T |
|
| Q |
101 |
caaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttcttgaagtgaatctttagt |
200 |
Q |
| |
|
| || || ||||| |||||||| ||||||||||| || |||| ||||||||||| |||| |||||||||||||||||| |||||||| || ||||| | |
|
|
| T |
11094716 |
cgaaaagtaatatacctctacatggctttagaagtccacctttgaaaaggtctggtcttctaaggggaagcattactagctcttgaagcgattcttttat |
11094815 |
T |
|
| Q |
201 |
ctcgtctaaggcaccaatgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttctcaaactcattatcaggaacttcc |
300 |
Q |
| |
|
||| ||||| ||||| || || | |||||| || || || |||||||| ||||| ||||||||||| ||||||||||| || || || || ||||||||| |
|
|
| T |
11094816 |
ctcatctaatgcaccgatatctgcgaatgtaacacctatctcatttgcagggataacttcaggtctaattcgcttctcgaattcgttgtcgggaacttcc |
11094915 |
T |
|
| Q |
301 |
tgcaag |
306 |
Q |
| |
|
|||||| |
|
|
| T |
11094916 |
tgcaag |
11094921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 39697027 - 39697136
Alignment:
| Q |
7 |
gaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaata |
106 |
Q |
| |
|
||||| ||| |||||||||| | ||||||||| |||||||||| ||| |||| | |||||||| |||||||||||||| || ||||| || ||||| | |
|
|
| T |
39697027 |
gaagtaatgctagacatggagatgttaatgaaatttgctccagcttcggttgctaccgcctttgcaagcattgtttttcccgtgccaggggggccaaaaa |
39697126 |
T |
|
| Q |
107 |
gcaatattcc |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
39697127 |
gcaatattcc |
39697136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 44926730 - 44926625
Alignment:
| Q |
28 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
127 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||| ||||| || ||||| || |||| ||| |||| |||| |
|
|
| T |
44926730 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggct |
44926631 |
T |
|
| Q |
128 |
ttagaa |
133 |
Q |
| |
|
| |||| |
|
|
| T |
44926630 |
tcagaa |
44926625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 44935170 - 44935065
Alignment:
| Q |
28 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
127 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| ||||| || |||||||| |||||||| ||||| || ||||| ||||||| ||| |||| |||| |
|
|
| T |
44935170 |
acattgatgaaacttgctccagcttcatttgcaattgccttggcaagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggct |
44935071 |
T |
|
| Q |
128 |
ttagaa |
133 |
Q |
| |
|
| |||| |
|
|
| T |
44935070 |
tcagaa |
44935065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 45988556 - 45988450
Alignment:
| Q |
28 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
127 |
Q |
| |
|
||||| |||||||||||||||| || || ||||| |||||||| |||||||| |||||||| ||||| || ||||| ||||||| ||| |||| |||| |
|
|
| T |
45988556 |
acattgatgaaacttgctccagattcattagcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggct |
45988457 |
T |
|
| Q |
128 |
ttagaag |
134 |
Q |
| |
|
| ||||| |
|
|
| T |
45988456 |
tcagaag |
45988450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University