View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_55 (Length: 317)
Name: NF9262_low_55
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 14354410 - 14354619
Alignment:
| Q |
14 |
ggacatcaaccaaatttttaattttcataattaatcaatattatctattgaagaagccttttccctttaactagt-aataataagtaatgacttatatgt |
112 |
Q |
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| T |
14354410 |
ggacatcaaccaaacttttaattttcataattaattaatattatctattgaagaagccttttccctttaactagtaaataataagtaatgacttatatgt |
14354509 |
T |
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| Q |
113 |
ttctatgcatatctatatatatgcaataattctcttcagaagattgtcaacnnnnnnnnttctgatcaataaagacattgtgttgtgttggccatttgtt |
212 |
Q |
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| T |
14354510 |
ttctatgcat---------------ataattctcttcagaagattgtcaacaaaaaaaattctgatcaataaagacattgtgttgtgttggccatttgtt |
14354594 |
T |
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| Q |
213 |
atatgtatttgttatatataataat |
237 |
Q |
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||||||||||||||||||||||||| |
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| T |
14354595 |
atatgtatttgttatatataataat |
14354619 |
T |
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