View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9262_low_6 (Length: 723)

Name: NF9262_low_6
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9262_low_6
NF9262_low_6
[»] chr2 (15 HSPs)
chr2 (62-399)||(19506155-19506481)
chr2 (446-581)||(19506026-19506161)
chr2 (24-108)||(23692858-23692942)
chr2 (17-87)||(4876902-4876972)
chr2 (31-108)||(8164787-8164865)
chr2 (24-108)||(29603701-29603786)
chr2 (31-107)||(8998178-8998255)
chr2 (24-89)||(23696645-23696710)
chr2 (30-76)||(5771987-5772033)
chr2 (30-76)||(26126038-26126084)
chr2 (26-91)||(26382249-26382314)
chr2 (31-89)||(8168720-8168779)
chr2 (30-76)||(7310839-7310885)
chr2 (26-87)||(26384073-26384134)
chr2 (30-87)||(45279071-45279129)
[»] chr5 (22 HSPs)
chr5 (64-333)||(20568397-20568667)
chr5 (611-667)||(629814-629870)
chr5 (30-119)||(38836885-38836975)
chr5 (16-87)||(8460283-8460354)
chr5 (18-92)||(20675682-20675756)
chr5 (16-107)||(20679865-20679950)
chr5 (30-107)||(26863613-26863691)
chr5 (16-88)||(20675356-20675428)
chr5 (16-76)||(20680115-20680176)
chr5 (16-87)||(20671134-20671205)
chr5 (16-96)||(40933322-40933404)
chr5 (43-119)||(40572216-40572292)
chr5 (17-87)||(27073805-27073875)
chr5 (16-76)||(40936717-40936778)
chr5 (30-88)||(26857381-26857440)
chr5 (31-89)||(35415777-35415836)
chr5 (668-710)||(629982-630024)
chr5 (337-403)||(20568697-20568763)
chr5 (30-76)||(38840804-38840850)
chr5 (64-108)||(20817712-20817755)
chr5 (16-87)||(37256953-37257025)
chr5 (31-76)||(43041963-43042008)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-108)||(194713-194805)
[»] chr8 (32 HSPs)
chr8 (17-105)||(31709022-31709110)
chr8 (17-119)||(20134848-20134951)
chr8 (16-119)||(17007903-17008005)
chr8 (16-119)||(17540945-17541047)
chr8 (29-107)||(21408489-21408568)
chr8 (29-107)||(21802981-21803060)
chr8 (16-108)||(2291-2382)
chr8 (17-87)||(31711242-31711312)
chr8 (31-107)||(18973320-18973397)
chr8 (31-107)||(26908464-26908541)
chr8 (30-119)||(3300220-3300310)
chr8 (32-87)||(21945924-21945979)
chr8 (31-105)||(25502708-25502783)
chr8 (17-89)||(20131752-20131827)
chr8 (42-107)||(14673506-14673571)
chr8 (17-87)||(37718224-37718294)
chr8 (57-108)||(14366290-14366342)
chr8 (29-76)||(21834952-21834999)
chr8 (43-105)||(25548052-25548115)
chr8 (30-76)||(3303287-3303333)
chr8 (30-87)||(36281234-36281291)
chr8 (29-87)||(753459-753517)
chr8 (30-108)||(16083437-16083515)
chr8 (30-108)||(16084844-16084922)
chr8 (30-108)||(16086251-16086329)
chr8 (30-108)||(16087658-16087736)
chr8 (26-76)||(32231450-32231501)
chr8 (42-76)||(14676712-14676746)
chr8 (31-76)||(18977835-18977880)
chr8 (31-76)||(25560310-25560355)
chr8 (31-76)||(26905226-26905271)
chr8 (16-85)||(17526559-17526628)
[»] chr1 (17 HSPs)
chr1 (17-108)||(24280865-24280957)
chr1 (17-108)||(20442625-20442717)
chr1 (29-107)||(19749646-19749725)
chr1 (30-107)||(15158001-15158079)
chr1 (17-87)||(24276773-24276844)
chr1 (17-87)||(18433306-18433375)
chr1 (17-85)||(20514486-20514555)
chr1 (17-87)||(12020169-12020240)
chr1 (16-108)||(33295693-33295784)
chr1 (43-108)||(555342-555408)
chr1 (30-76)||(15142607-15142653)
chr1 (30-89)||(20435184-20435244)
chr1 (29-76)||(19751872-19751919)
chr1 (29-100)||(20194979-20195049)
chr1 (43-104)||(546061-546123)
chr1 (30-76)||(36910432-36910478)
chr1 (43-119)||(19913722-19913798)
[»] chr7 (25 HSPs)
chr7 (18-108)||(11527445-11527535)
chr7 (17-119)||(44357120-44357223)
chr7 (30-108)||(23532433-23532511)
chr7 (18-87)||(11544850-11544919)
chr7 (16-107)||(15932208-15932299)
chr7 (31-119)||(37282817-37282907)
chr7 (31-108)||(12538400-12538478)
chr7 (31-108)||(15834912-15834990)
chr7 (31-119)||(362059-362147)
chr7 (17-89)||(44360241-44360316)
chr7 (15-95)||(6198769-6198849)
chr7 (18-87)||(30096790-30096859)
chr7 (16-87)||(6202044-6202115)
chr7 (16-87)||(18016970-18017041)
chr7 (31-76)||(37278674-37278719)
chr7 (26-76)||(11734991-11735042)
chr7 (31-89)||(12529368-12529427)
chr7 (29-76)||(23517841-23517888)
chr7 (31-100)||(357346-357416)
chr7 (30-87)||(9214531-9214588)
chr7 (31-76)||(21627496-21627541)
chr7 (64-119)||(783725-783777)
chr7 (30-119)||(9066490-9066578)
chr7 (43-107)||(5332477-5332542)
chr7 (31-76)||(15828450-15828495)
[»] scaffold0208 (1 HSPs)
scaffold0208 (17-100)||(1442-1526)
[»] chr4 (18 HSPs)
chr4 (16-108)||(22751837-22751928)
chr4 (30-119)||(10755095-10755184)
chr4 (30-119)||(10968864-10968953)
chr4 (31-108)||(722864-722942)
chr4 (24-107)||(20494700-20494784)
chr4 (16-76)||(22763115-22763175)
chr4 (16-87)||(27789167-27789238)
chr4 (16-89)||(28924652-28924725)
chr4 (16-87)||(30953283-30953354)
chr4 (29-119)||(28926735-28926826)
chr4 (24-119)||(23878834-23878930)
chr4 (24-88)||(7202731-7202795)
chr4 (26-76)||(23882485-23882536)
chr4 (31-88)||(726438-726496)
chr4 (30-76)||(10757372-10757418)
chr4 (30-76)||(10970543-10970589)
chr4 (30-76)||(12327959-12328006)
chr4 (24-87)||(20503321-20503385)
[»] chr3 (31 HSPs)
chr3 (29-119)||(16082800-16082890)
chr3 (17-107)||(103327-103418)
chr3 (16-108)||(17593796-17593890)
chr3 (24-105)||(15417852-15417933)
chr3 (30-108)||(8856883-8856962)
chr3 (30-119)||(14566172-14566259)
chr3 (29-108)||(15926643-15926721)
chr3 (30-119)||(18556775-18556866)
chr3 (30-108)||(26907127-26907206)
chr3 (31-135)||(33484754-33484858)
chr3 (17-87)||(94485-94556)
chr3 (30-108)||(12209031-12209109)
chr3 (31-120)||(2689138-2689227)
chr3 (29-119)||(10776782-10776872)
chr3 (44-135)||(11137132-11137225)
chr3 (16-107)||(14429936-14430025)
chr3 (16-76)||(17601804-17601865)
chr3 (16-107)||(20012404-20012495)
chr3 (29-76)||(16091976-16092023)
chr3 (17-88)||(19767616-19767688)
chr3 (31-85)||(54110948-54111002)
chr3 (30-76)||(8854069-8854115)
chr3 (30-87)||(12206640-12206697)
chr3 (30-76)||(26900551-26900597)
chr3 (24-88)||(8368195-8368259)
chr3 (43-107)||(19808306-19808371)
chr3 (16-89)||(14789661-14789735)
chr3 (31-76)||(5195580-5195625)
chr3 (31-76)||(2692813-2692858)
chr3 (30-90)||(14561015-14561075)
chr3 (31-76)||(33481023-33481068)
[»] scaffold0179 (2 HSPs)
scaffold0179 (16-133)||(24952-25068)
scaffold0179 (16-88)||(27611-27683)
[»] scaffold0045 (1 HSPs)
scaffold0045 (29-108)||(78807-78887)
[»] scaffold0264 (1 HSPs)
scaffold0264 (24-108)||(12928-13013)
[»] scaffold0071 (1 HSPs)
scaffold0071 (24-105)||(44305-44386)
[»] scaffold0023 (2 HSPs)
scaffold0023 (17-133)||(146796-146912)
scaffold0023 (17-92)||(150003-150079)
[»] scaffold0076 (1 HSPs)
scaffold0076 (16-135)||(36989-37107)
[»] chr6 (16 HSPs)
chr6 (16-105)||(19577206-19577297)
chr6 (29-108)||(11231437-11231517)
chr6 (17-87)||(19011603-19011674)
chr6 (31-119)||(4282703-4282791)
chr6 (17-76)||(19573616-19573676)
chr6 (30-135)||(8650179-8650283)
chr6 (31-107)||(11694869-11694946)
chr6 (31-107)||(34336054-34336131)
chr6 (24-76)||(20090427-20090479)
chr6 (29-76)||(23606971-23607018)
chr6 (30-76)||(8668209-8668255)
chr6 (30-76)||(16688686-16688732)
chr6 (43-105)||(22622521-22622584)
chr6 (31-76)||(26460037-26460082)
chr6 (30-89)||(22467666-22467726)
chr6 (78-135)||(24065668-24065726)
[»] scaffold0716 (1 HSPs)
scaffold0716 (29-135)||(2258-2365)
[»] scaffold0369 (1 HSPs)
scaffold0369 (16-87)||(7670-7741)
[»] scaffold0013 (3 HSPs)
scaffold0013 (29-108)||(135707-135786)
scaffold0013 (29-87)||(133405-133463)
scaffold0013 (29-87)||(137934-137992)
[»] scaffold0878 (1 HSPs)
scaffold0878 (17-76)||(4362-4421)
[»] scaffold1778 (1 HSPs)
scaffold1778 (30-107)||(892-970)
[»] scaffold0010 (1 HSPs)
scaffold0010 (31-119)||(245294-245383)
[»] scaffold0064 (1 HSPs)
scaffold0064 (16-87)||(25704-25775)
[»] scaffold0888 (1 HSPs)
scaffold0888 (29-105)||(4198-4274)
[»] scaffold0320 (1 HSPs)
scaffold0320 (16-87)||(12141-12212)
[»] scaffold0167 (1 HSPs)
scaffold0167 (16-87)||(10398-10469)
[»] scaffold0202 (2 HSPs)
scaffold0202 (30-76)||(10327-10373)
scaffold0202 (30-76)||(13814-13860)
[»] scaffold0130 (1 HSPs)
scaffold0130 (30-76)||(14936-14982)
[»] scaffold0009 (1 HSPs)
scaffold0009 (27-87)||(96200-96260)
[»] scaffold0139 (1 HSPs)
scaffold0139 (17-87)||(2845-2915)
[»] scaffold1505 (1 HSPs)
scaffold1505 (30-76)||(377-423)
[»] scaffold0438 (1 HSPs)
scaffold0438 (24-73)||(3849-3899)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 62 - 399
Target Start/End: Complemental strand, 19506481 - 19506155
Alignment:
Q  62 ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaacttacttgggccacacc-ttttcaacctccacttctccccggtt 160  Q
    ||||||||| ||||| |||  ||||||||| ||||||||||||||| | ||||||||| ||| |||||||||| ||||||||||||||||| |||| |||    
T  19506481 ccttattgtgctttt-tgcttgtacagttgacgccgtctgtgggaatc-ggtaaaactaactcgggccacacccttttcaacctccacttcgcccccgtt 19506384  T
Q  161 atggccttttttctttgttgatgccgtcgaggaaaatgacaacggcggccttgtcgtctgatctcccgagcgtcggtggtcgaagagattatgatatcag 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19506383 atggccttttttctttgttgatgccgtcgaggaaaatgacaaccgcggccttgtcgtctgatctcccgagcgtcggtggtcgaagagattatgatatcag 19506284  T
Q  261 gtcgtacctttctaactcttatttttcaattaatccttctgtcaaaattgctaaagcgataaagattacaatcagtttttgtccttctgtgctttcattt 360  Q
    |||||||||||||||||||  | |||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19506283 gtcgtacctttctaactctattattt----------ttctgtcaaaattgctaaagcgataaagattacaatcagtttttgtccttctgtgcttttattt 19506194  T
Q  361 acgaaaacaaatttagttttcggcatgaattcggtttcg 399  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19506193 acgaaaacaaatttagttttcggcatgaattcggtttcg 19506155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 446 - 581
Target Start/End: Complemental strand, 19506161 - 19506026
Alignment:
Q  446 ggttacgtgcgataagcatatggttatgtcggtttcaatttcacgtatcaatatagagtttaagatggagtctatgtttcaactaggaagcactattatg 545  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19506161 ggtttcgtgcgataagcatatggttatgtcggtttcaatttcacgtatcaatatagagtttaagatggagtctatgtttcaactaggaaccactattatg 19506062  T
Q  546 aatggtttctgatatatcaattacaattaggattga 581  Q
    ||||| || | ||||||||||| |||||||||||||    
T  19506061 aatggcttttaatatatcaattgcaattaggattga 19506026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 23692858 - 23692942
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  23692858 agtctaataccctattatacgattcttaaccctagaatccttgttgtacttttctgcaagtacagttggcgccgtctgtgggaaa 23692942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 4876902 - 4876972
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  4876902 aataatcagtctaaaaccctagtatacgattcttaaccctaaaatctttattgtacttttatgcaagtaca 4876972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 8164787 - 8164865
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||    
T  8164787 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaaa 8164865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 29603786 - 29603701
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||| ||||||||| || |||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  29603786 agtcaaaaaccctaatagacgattctgaaccctagaatccttattgtactttttctgcaagtacaattggcgccgtctgtgggaaa 29603701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 8998178 - 8998255
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||||| |||||||||||||||||||||| |||  ||||||||  ||||||||||||||||||||||||||||||    
T  8998178 aaccctagtctacgattcttaaccctagaatctttaccgtactttttctgcaagtacagttggcgccgtctgtgggaa 8998255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 23696645 - 23696710
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagt 89  Q
    ||||||| |||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  23696645 agtctaagaccctaatatacgattcttaaccctagaatccttgttgtacttttctgcaagtacagt 23696710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 5771987 - 5772033
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  5771987 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 5772033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 26126084 - 26126038
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  26126084 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 26126038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 26382249 - 26382314
Alignment:
Q  26 tctaaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtacagttg 91  Q
    ||||||||||||| ||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||    
T  26382249 tctaaaaccctagaatacgatgcttaatcctagaatctcttattgtactttt-tgcaagtacagttg 26382314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 8168720 - 8168779
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagt 89  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| ||||||||||||    
T  8168720 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagt 8168779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 7310885 - 7310839
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || ||| |||||||||||||||||||||||||||||||    
T  7310885 aaaccctaatagacgtttcttaaccctagaatccttattgtactttt 7310839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 26384073 - 26384134
Alignment:
Q  26 tctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    ||||||||||||| ||| |||||||||||||||||| || |||||||||||| ||||||||||    
T  26384073 tctaaaaccctagaatatgattcttaaccctagaatcccctattgtactttt-tgcaagtaca 26384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 45279071 - 45279129
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtacttt-tgtgcaagtaca 87  Q
    |||||||| || ||||||||||||||||| |||||||||||||||| | ||||||||||    
T  45279071 aaaccctaatagacgattcttaaccctaggatccttattgtactttatctgcaagtaca 45279129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 64 - 333
Target Start/End: Original strand, 20568397 - 20568667
Alignment:
Q  64 ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaacttacttgggccacaccttttcaacctccacttctccccggttatg 163  Q
    ||||||||||||| |  ||||||||||||||| |||||||  || |||||||||||||| ||||||||||| |||||||||||||||| ||||  |||||    
T  20568397 ttattgtacttttctagaagtacagttggcgctgtctgtgataa-ccggtaaaacttacgtgggccacaccctttcaacctccacttcgccccc-ttatg 20568494  T
Q  164 gccttttttctttgttgatgccgtcgaggaaaatgacaacggcggccttgtcgtctgatctcccgagcgtcggtggtcgaagagattatgatatcaggtc 263  Q
    ||||||||||||| | ||||||| ||| ||| ||| ||| |||||||||||||| ||||||||||| ||| |||||| |||||| ||||||||||||||     
T  20568495 gccttttttctttttcgatgccgccgaagaagatggcaaaggcggccttgtcgtatgatctcccga-cgttggtggttgaagaggttatgatatcaggtt 20568593  T
Q  264 gtacctttctaactc--ttatttttcaattaatccttctgtc--aaaattgctaaagcgataaagattacaatc 333  Q
    |||||| ||||||||  |||||||||||||||||| ||| ||   ||| || ||||| ||||||||||||||||    
T  20568594 gtacctatctaactctgttatttttcaattaatccctctatcgagaaagtgttaaagggataaagattacaatc 20568667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 611 - 667
Target Start/End: Original strand, 629814 - 629870
Alignment:
Q  611 attttcgtaatgatactagattgcaggattttgtggagaaagatatcagcgatcaaa 667  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  629814 attttcgtaatgatactagattgcaggattttgtggagaaagatatcagcgatcaaa 629870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 38836885 - 38836975
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    |||||||| || ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||| || ||||||||||    
T  38836885 aaaccctaatagacgattcttaaccctagaatcattattgtactttttctgcaagtacagttggcgccgtatgtggggaaacggtaaaact 38836975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 8460283 - 8460354
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  8460283 caataatgagtctaaaaccctaatatacgattcttaaccctagaataccttattgtactttt-tgcaagtaca 8460354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 20675756 - 20675682
Alignment:
Q  18 ataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttgg 92  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  20675756 ataataagtttaaaaccctagtatacgattcttaaccctagaatcccttattgtactttt-tgcaagtacagttgg 20675682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 20679950 - 20679865
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    |||||||  |||||||||||||||||||||||||||||||      ||||||||||||||| ||||||||||||||||||||||||||||||    
T  20679950 caataatcggtctaaaaccctagtatacgattcttaacccc-----ccttattgtactttt-tgcaagtacagttggcgccgtctgtgggaa 20679865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 26863691 - 26863613
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    |||||||| || ||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||    
T  26863691 aaaccctaatagacgattcttaaccctagaatccttactgtactttttatgcaaatacagttggcgccgtctgtgggaa 26863613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 20675428 - 20675356
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacag 88  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  20675428 caataataagactaaaaccctagtatacgattcttaaccctagaatcccttattgtactttt-tgcaagtacag 20675356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 20680176 - 20680115
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 76  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20680176 caataatcagtctaaaaccctagtatacgattcttaaccctagaatcccttattgtactttt 20680115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 20671205 - 20671134
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtaca 87  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  20671205 caataatcagtctaagaccctagtatacgattcttaaccttagaatccattattgtactttt-tgcaagtaca 20671134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 40933322 - 40933404
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaa-tccttattgtac-ttttgtgcaagtacagttggcgcc 96  Q
    ||||||| ||||||||||||||  |||| ||||||||||||| || |||||||||||| |||| |||||||||||||||||||    
T  40933322 caataatcagtctaaaaccctaacatactattcttaaccctataattccttattgtactttttctgcaagtacagttggcgcc 40933404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 40572292 - 40572216
Alignment:
Q  43 cgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||||||||||| |||| |||  ||||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  40572292 cgattcttaaccctaaaatctttaccgtactttttctgcaagtacagttggcgccgtctgtgggaaa-cggtaaaact 40572216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 27073805 - 27073875
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    |||||| ||||||||| |||||||||||||| |||||| |||||| ||||||||||||||| ||||||||||    
T  27073805 aataatcagtctaaaaacctagtatacgatttttaaccttagaatcccttattgtactttt-tgcaagtaca 27073875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 40936717 - 40936778
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 76  Q
    ||||||| |||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||    
T  40936717 caataatcagtctaaaaccctaatatactattcttaaccctataatcccttattgtactttt 40936778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 26857440 - 26857381
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacag 88  Q
    |||||||| || ||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  26857440 aaaccctaatagacgattcttaaccctagaatccttactgtactttttctgcaagtacag 26857381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 35415777 - 35415836
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagt 89  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| ||||||||||||    
T  35415777 aaccctagtctacgattcttaaccctagaatccttaccgtactttttttgcaagtacagt 35415836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 710
Target Start/End: Original strand, 629982 - 630024
Alignment:
Q  668 aagtgcaggaagttttcttactctcgaggttatctgtgctcct 710  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  629982 aagtgcaggaagttttcttactctcgaggttatcagtggtcct 630024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 20568697 - 20568763
Alignment:
Q  337 ttttgtccttctgtgctttcatttacgaaaacaaatttagttttcggcatgaattcggtttcggcta 403  Q
    |||||| |||||||| ||| ||| ||||||| ||||||||||||| || |||||| |||||||||||    
T  20568697 ttttgttcttctgtggtttaattcacgaaaataaatttagttttcagcctgaatttggtttcggcta 20568763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 38840804 - 38840850
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || ||||||||||||||||||||| |||||||||||||    
T  38840804 aaaccctaatagacgattcttaaccctagaatcattattgtactttt 38840850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 20817712 - 20817755
Alignment:
Q  64 ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  20817712 ttattgtactttta-gcaagtacagttggcgccgtctgtgggaaa 20817755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 37257025 - 37256953
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaa-ccctagaatc-cttattgtacttttgtgcaagtaca 87  Q
    ||||||| ||||  |||||||| |||||||||||||| |||||||||| | |||||||||||| ||||||||||    
T  37257025 caataatcagtcataaaccctaatatacgattcttaacccctagaatcacctattgtactttt-tgcaagtaca 37256953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 43041963 - 43042008
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||| | ||||||||||||||||||||||||||  ||||||||    
T  43041963 aaccctattctacgattcttaaccctagaatccttaccgtactttt 43042008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 194713 - 194805
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  194713 caataatcagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttatgcgagtacagttggcgccgtctgtgggaaa 194805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 31709022 - 31709110
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtggg 105  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  31709022 aataatcagtctaaaaccctagtatacgattcttaaccctagaatctttattgtacttttatgcaagtacagttggcgccgtctgtggg 31709110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 20134951 - 20134848
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaaccggta 114  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||    
T  20134951 aataatcagtctaaaaaccctagtatacgattcttaaccctagaatccttattgtactttttatgcaagtacagttggcgccatctgtggg-aaccggta 20134853  T
Q  115 aaact 119  Q
    |||||    
T  20134852 aaact 20134848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 17007903 - 17008005
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggta 114  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| |||||    
T  17007903 caataatcagtctaaaaccctaatatccgattcttaaccctagaatcccttattgtactttt-tgcaagtacagttggggccgtctgtgggaaa-cggta 17008000  T
Q  115 aaact 119  Q
    |||||    
T  17008001 aaact 17008005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 17541047 - 17540945
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggta 114  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| |||||    
T  17541047 caataatcagtctaaaaccctaatatccgattcttaaccctagaatcccttattgtactttt-tgcaagtacagttggggccgtctgtgggaaa-cggta 17540950  T
Q  115 aaact 119  Q
    |||||    
T  17540949 aaact 17540945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 21408489 - 21408568
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  21408489 aaaaccctaatagacgattcttaaccctagaatccttattgtactttttctgcaagtacagttggcgccgtctgtgggaa 21408568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 21802981 - 21803060
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  21802981 aaaaccctaatagacgattcttaaccctagaatccttattgtactttttctgcaagtacagttggcgccgtctgtgggaa 21803060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 2382 - 2291
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  2382 caataatcagtc-aaaaccctaatatacgattcttaaccctagaatcacctattgtactttt-tgcaagtacagttggcgccgtctgtgggaaa 2291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 31711242 - 31711312
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  31711242 aataatcagtctaaaaccctagtatacgattcttaaccctaaaatctttattgtacttttatgcaagtaca 31711312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 18973320 - 18973397
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||||||    
T  18973320 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaa 18973397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 26908541 - 26908464
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||||||    
T  26908541 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaa 26908464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 3300220 - 3300310
Alignment:
Q  30 aaaccctagtatacgattcttaaccc-tagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    |||||||| || |||||||||||||| |||||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  3300220 aaaccctaataaacgattcttaacccctagaatccttatggtactttttctgcaagtacagttggcgccgtctgtggg-aaccggtaaaact 3300310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 21945924 - 21945979
Alignment:
Q  32 accctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21945924 accctagtatacgattcttaaccctagaatccttattgtacttttctgcaagtaca 21945979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 25502708 - 25502783
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtggg 105  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||||    
T  25502708 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtggg 25502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 20131827 - 20131752
Alignment:
Q  17 aataatgagtctaaaa--ccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagt 89  Q
    |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  20131827 aataatcagtctaaaaacccctagtatacgattcttaaccctagaatccttattgtactttttatgcaagtacagt 20131752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 14673506 - 14673571
Alignment:
Q  42 acgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  14673506 acgattcttaacc-tagaatccttattgtactttttctgcaagtacagttggcgccgtctgtgggaa 14673571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 37718224 - 37718294
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  37718224 aataatcagtctaaaaccttagtatacgattcttaaccctagaatcccctattgtactttt-tgcaagtaca 37718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 14366290 - 14366342
Alignment:
Q  57 agaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  14366290 agaatccttattgtactttttctgcaagtacagttggcgccgtctgtgggaaa 14366342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 21834952 - 21834999
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||    
T  21834952 aaaaccctaatagacgattcttaaccctagaatccttattgtactttt 21834999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 25548052 - 25548115
Alignment:
Q  43 cgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtggg 105  Q
    |||||||||||||||||||| |||  ||||||||  ||||||||||||||||||||||||||||    
T  25548052 cgattcttaaccctagaatctttaccgtactttttctgcaagtacagttggcgccgtctgtggg 25548115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 3303287 - 3303333
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  3303287 aaaccctaataaacgattcttaaccctagaatccttattgtactttt 3303333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 36281291 - 36281234
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    |||||||| || ||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  36281291 aaaccctaatagacgattcttaaccctagaatcattattatacttttttgcaagtaca 36281234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 753459 - 753517
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtaca 87  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  753459 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttt-tgcaagtaca 753517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 16083515 - 16083437
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| ||||||| ||||||||||  |||| ||||||| ||||| | |||||| ||||||||||||||||||||||    
T  16083515 aaaccctagaatacgatacttaaccctaatatcccttattgtgctttttt-caagtatagttggcgccgtctgtgggaaa 16083437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 16084922 - 16084844
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| ||||||| ||||||||||  |||| ||||||| ||||| | |||||| ||||||||||||||||||||||    
T  16084922 aaaccctagaatacgatacttaaccctaatatcccttattgtgctttttt-caagtatagttggcgccgtctgtgggaaa 16084844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 16086329 - 16086251
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| ||||||| ||||||||||  |||| ||||||| ||||| | |||||| ||||||||||||||||||||||    
T  16086329 aaaccctagaatacgatacttaaccctaatatcccttattgtgctttttt-caagtatagttggcgccgtctgtgggaaa 16086251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 16087736 - 16087658
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| ||||||| ||||||||||  |||| ||||||| ||||| | |||||| ||||||||||||||||||||||    
T  16087736 aaaccctagaatacgatacttaaccctaatatcccttattgtgctttttt-caagtatagttggcgccgtctgtgggaaa 16087658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 32231501 - 32231450
Alignment:
Q  26 tctaaaaccctagtatacgattcttaaccctagaatc-cttattgtactttt 76  Q
    |||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  32231501 tctaaaaccctaatatacgattcttaaccctagaatcacctattgtactttt 32231450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 14676712 - 14676746
Alignment:
Q  42 acgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||||||||||||||||||||||||||||||    
T  14676712 acgattcttaaccctagaatccttattgtactttt 14676746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 18977835 - 18977880
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  18977835 aaccctagtctacgattcttaaccctagaatccttaccgtactttt 18977880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 25560310 - 25560355
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  25560310 aaccctagtctacgattcttaaccctagaatccttaccgtactttt 25560355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 26905271 - 26905226
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  26905271 aaccctagtctacgattcttaaccctagaatccttaccgtactttt 26905226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 17526628 - 17526559
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagta 85  Q
    ||||||| ||||||||| |||| |||  |||||||||||||||||| ||||||||||| ||| ||||||||    
T  17526628 caataatcagtctaaaatcctaatatctgattcttaaccctagaatcccttattgtacattt-tgcaagta 17526559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 24280957 - 24280865
Alignment:
Q  17 aataatgagtctaaaaccctagtata-cgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24280957 aataatcagtcttaaaccctagtataacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 24280865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 20442625 - 20442717
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  20442625 aataatcagtctaaaaaccctagtatacgattcttaaccctagaatccttattgtacttttatgcaagtacagttggcgccgtttgtgggaaa 20442717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 19749646 - 19749725
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  19749646 aaaaccctaatagacgattcttaaccctagaatccttattgtactttttctgcaagtacagttggcgccgtctgtgggaa 19749725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 15158079 - 15158001
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    |||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  15158079 aaaccctaatagacgattcttaaccctagaatccttattgtactttttctgcaagtacagttggcgccgtctgtgggaa 15158001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 24276844 - 24276773
Alignment:
Q  17 aataatgagtctaaaaccctagtata-cgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24276844 aataatcagtcttaaaccctagtataacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 24276773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 18433306 - 18433375
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18433306 aataattagtctaaaacc-tagtatacgattcttaaccctagaatccttattgtacttttctgcaagtaca 18433375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 20514486 - 20514555
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagta 85  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20514486 aataatcagtctaaaaaccctagtatacgattcttaaccctagaatccttattgtacttttatgcaagta 20514555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 12020240 - 12020169
Alignment:
Q  17 aataatgagtctaaaaccc-tagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    |||||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12020240 aataatcagtctaaaaaccatagaatacgattcttaaccctagaatccttattgtacttttctgcaagtaca 12020169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 33295693 - 33295784
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatcct-tattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||| |||||||| |||||| ||||||| || |||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  33295693 caataatcagtctaaa-ccctagaatacgatactgaaccctagtatcctctattgtgctttt-tgcaagtacagttggcgccgtctgtgggaaa 33295784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 555408 - 555342
Alignment:
Q  43 cgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||||||||||||||||| |||  ||||||||  |||||||||||||||||||||||||||||||    
T  555408 cgattcttaaccctagaatctttaccgtactttttctgcaagtacagttggcgccgtctgtgggaaa 555342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 15142653 - 15142607
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  15142653 aaaccctaatatacgattcttaaccctagaatccttattgtactttt 15142607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 20435244 - 20435184
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagt 89  Q
    |||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  20435244 aaaccctaatagacgattcttaaccctagaatccttattgtactttttctgcaagtacagt 20435184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 19751872 - 19751919
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||    
T  19751872 aaaaccctaatagacgattcttaaccctagaatccttattgtactttt 19751919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 20194979 - 20195049
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtct 100  Q
    |||||||||||| ||||||||||||| |||||||||||||||  |||| | |||||| ||||||||||||||    
T  20194979 aaaaccctagtacacgattcttaaccatagaatccttattgt-gtttttttcaagtatagttggcgccgtct 20195049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 546123 - 546061
Alignment:
Q  43 cgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgg 104  Q
    |||||||||||||||||||| |||  ||||||||  |||||||||||||||||||||||||||    
T  546123 cgattcttaaccctagaatctttaccgtactttttctgcaagtacagttggcgccgtctgtgg 546061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 36910478 - 36910432
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  36910478 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 36910432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 19913798 - 19913722
Alignment:
Q  43 cgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    |||||||||||||||||||| |||  ||||||||  |||||||||||||||||||| ||||||| || ||||||||||    
T  19913798 cgattcttaaccctagaatctttaccgtactttttctgcaagtacagttggcgccgactgtggggaa-cggtaaaact 19913722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 11527445 - 11527535
Alignment:
Q  18 ataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11527445 ataatcagtctaaaaccctagtatacgattcttaacactataatccttattgtacttttgtgcaagtacaattggcgccgtctgtgggaaa 11527535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 44357120 - 44357223
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaaccggta 114  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||    
T  44357120 aataatcagtctaaaaaccctagtatacgattcttaaccctagaatccttattgtactttttatgcaagtacagttggcgccatctgtggg-aaccggta 44357218  T
Q  115 aaact 119  Q
    |||||    
T  44357219 aaact 44357223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 23532511 - 23532433
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  23532511 aaaccctaatagacgattcttaaccctagaatccttattgtacttttctgcaagtacagttggtgccgtctgtgggaaa 23532433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 11544850 - 11544919
Alignment:
Q  18 ataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11544850 ataatcagtctaaaatcctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 11544919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 15932299 - 15932208
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||    
T  15932299 caataatcagtctaaaaccctaatatacgattcttaaccctagaatcctttactgtgctttt-tgcaagtacagttggcgccgtctgtgggaa 15932208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 37282907 - 37282817
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttgt--gcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||| |  |||||||||||||||||||||||||||||  ||||||||||    
T  37282907 aaccctagtctacgattcttaaccctagaatccttaccgtacttttttttgcaagtacagttggcgccgtctgtgggaactcggtaaaact 37282817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 12538478 - 12538400
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||    
T  12538478 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaaa 12538400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 15834990 - 15834912
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| |||||||||||||||||||||| |||  ||||||||  |||||||||||||||||||||||||||||||    
T  15834990 aaccctagtctacgattcttaaccctagaatctttaccgtactttttctgcaagtacagttggcgccgtctgtgggaaa 15834912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 362147 - 362059
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||| | ||||||||||| ||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  362147 aaccctaatctacgattcttagccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaaa-cggtaaaact 362059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 44360241 - 44360316
Alignment:
Q  17 aataatgagtctaaaa--ccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagt 89  Q
    |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  44360241 aataatcagtctaaaaacccctagtatacgattcttaaccctagaatccttattgtactttttatgcaagtacagt 44360316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 6198769 - 6198849
Alignment:
Q  15 tcaataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgc 95  Q
    |||||||| | |||||||||||| |||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||    
T  6198769 tcaataatcactctaaaaccctaatatacgattcttaatcttagaatcccttattgtactttt-tgcaagtacagttggcgc 6198849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 30096790 - 30096859
Alignment:
Q  18 ataatgagtctaaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtaca 87  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  30096790 ataatcagtctaaaaccctaatatacgattcttaaccctagaatctcttatcgtactttt-tgcaagtaca 30096859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 6202044 - 6202115
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtaca 87  Q
    ||||||| |||||||||||||| |||||||||| |||||||| |||| |||||||||||||| ||||||||||    
T  6202044 caataatcagtctaaaaccctaatatacgattcataaccctataatctcttattgtactttt-tgcaagtaca 6202115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 18016970 - 18017041
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    ||||||| |||||||||| || |||||| ||||||||||||||||| ||||||||||||||| ||||||||||    
T  18016970 caataatcagtctaaaactctggtatacaattcttaaccctagaatcccttattgtactttt-tgcaagtaca 18017041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 37278719 - 37278674
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  37278719 aaccctagtctacgattcttaaccctagaatccttatcgtactttt 37278674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 11734991 - 11735042
Alignment:
Q  26 tctaaaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 76  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  11734991 tctaaaaccctagaatacgattcttaaccctagaatcccttattgtgctttt 11735042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 12529427 - 12529368
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagt 89  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| ||||||||||||    
T  12529427 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagt 12529368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 23517888 - 23517841
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| || ||||||||||||||||||||||||||| |||||||    
T  23517888 aaaaccctaatagacgattcttaaccctagaatccttattatactttt 23517841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 357416 - 357346
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtct 100  Q
    ||||||| | ||||||||||| ||||||||||||||   |||||||  |||||||||||||||||||||||    
T  357416 aaccctaatctacgattcttagccctagaatccttaccttactttttctgcaagtacagttggcgccgtct 357346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 9214588 - 9214531
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtaca 87  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  9214588 aaaccctagtttacgattcttaaccctagaatctcttattgtgctttt-tgcaagtaca 9214531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 21627496 - 21627541
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  21627496 aaccctagtctacgattcttaaccctagaatccttaccgtactttt 21627541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 783777 - 783725
Alignment:
Q  64 ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||| ||||||||||    
T  783777 ttattgtacttttg--caagtacagttggcgccgtctgt-ggaaaacggtaaaact 783725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 9066490 - 9066578
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||||| ||||||| |||| |||| | || |||| |||| ||||| |||||||||||||||||| ||| |||||||| ||||||||||    
T  9066490 aaaccctagaatacgatacttagccctggtattccttgttgtgctttt-tgcaagtacagttggcgcagtccgtgggaaa-cggtaaaact 9066578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 5332542 - 5332477
Alignment:
Q  43 cgattcttaaccctagaatccttattgtacttttgtg-caagtacagttggcgccgtctgtgggaa 107  Q
    |||||||||||||||||||| |||  ||||||||  | | |||||||||| |||||||||||||||    
T  5332542 cgattcttaaccctagaatctttaccgtactttttcggctagtacagttgacgccgtctgtgggaa 5332477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 15828495 - 15828450
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| |||||||||||||||||||||| |||  ||||||||    
T  15828495 aaccctagtctacgattcttaaccctagaatctttaccgtactttt 15828450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 1526 - 1442
Alignment:
Q  17 aataatgagtctaaaaccctagtata-cgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtct 100  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1526 aataatcagtctaaaaccctagtataacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtct 1442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 22751837 - 22751928
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||    
T  22751837 caataataagtctaaaaccctagtatacgattcttaaccctagaatccttattgtactttt-ttcaagtacagttggcgctgtctgtgggaaa 22751928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 10755095 - 10755184
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    |||||||| || ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  10755095 aaaccctaatagacgattcttaaccctagaatctttattgtactttttttgcaagtacagttggcgccgtctgtgggaaa-cggtaaaact 10755184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 10968864 - 10968953
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    |||||||| || ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  10968864 aaaccctaatagacgattcttaaccctagaatctttattgtactttttttgcaagtacagttggcgccgtctgtgggaaa-cggtaaaact 10968953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 722864 - 722942
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||    
T  722864 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaaa 722942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 20494700 - 20494784
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaa-ccctagaatcc-ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  20494700 agtctaaaaccctaatatacgattcttaaaccctagaatcccttattgtactttt-tgcaagtacagttggcgccgtctgtaggaa 20494784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 22763115 - 22763175
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22763115 caataatcagtctaaaatcctagtatacgattcttaaccctagaatccttattgtactttt 22763175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 27789167 - 27789238
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  27789167 caataatcagtctaaaaccctagtatacgattcttaaccctagaatcccttattgtactttt-tgcaagtaca 27789238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 28924725 - 28924652
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagt 89  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  28924725 caataatcagtctaaaaccctagtatacgattcttaaccccagaatcccttattgtactttt-tgcaagtacagt 28924652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 30953283 - 30953354
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  30953283 caataatcagtataaaaccctagtatacgattcttaaccctagaatcccttattgtactttt-tgcaagtaca 30953354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 28926826 - 28926735
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaac-cggtaaaact 119  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||||| |||||||||| ||| || |||||||||||||| ||||||||||    
T  28926826 aaaaccctagtatacgattcttaatcatagaatcccttattgaactttt-tgcaagtacaattgacgtcgtctgtgggaaactcggtaaaact 28926735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 23878834 - 23878930
Alignment:
Q  24 agtctaaaaccctagtatac--gattcttaaccctagaatc-cttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    |||||||||||||| |||||  |||||||||| |||||||| |||||||| ||||| ||||||||| |||||| |||||||||||||| ||||||||||    
T  23878834 agtctaaaaccctaatatacacgattcttaacactagaatctcttattgtgctttt-tgcaagtaccgttggcaccgtctgtgggaaa-cggtaaaact 23878930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 7202795 - 7202731
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacag 88  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  7202795 agtctaaaaccctaatatacgattcttaaccctagaatcccttattgtgctttt-tgcaagtacag 7202731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 23882485 - 23882536
Alignment:
Q  26 tctaaaaccctagtatacgattcttaaccctagaatc-cttattgtactttt 76  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| |||||    
T  23882485 tctaaaaccctaatatacgattcttaaccctagaatctcttattgtgctttt 23882536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 726438 - 726496
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacag 88  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| |||||||||||    
T  726438 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacag 726496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 10757372 - 10757418
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || ||||||||||||||||||||| |||||||||||||    
T  10757372 aaaccctaatagacgattcttaaccctagaatctttattgtactttt 10757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 10970543 - 10970589
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || ||||||||||||||||||||| |||||||||||||    
T  10970543 aaaccctaatagacgattcttaaccctagaatctttattgtactttt 10970589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 12327959 - 12328006
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 76  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  12327959 aaaccctagaatacgattcttaatcctagaatcccttattgtactttt 12328006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 20503321 - 20503385
Alignment:
Q  24 agtctaaaaccctagtatacgattctt-aaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    |||||||||||||| ||||||||| || |||| |||||| ||||||||||||||| ||||||||||    
T  20503321 agtctaaaaccctaatatacgattattaaaccttagaatcccttattgtactttt-tgcaagtaca 20503385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 16082800 - 16082890
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  16082800 aaaaccctagtatacgattcttaaccctagaatccttattgtactttttatgcaagtacagttggcgccgtctgtgggaaa-cggtaaaact 16082890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 103418 - 103327
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  103418 aataatcagtctaaaaaccctaatatacgattcttaaccctagaatccttattgtacttttatgcaagtacagttggcgccgtctgtaggaa 103327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 17593796 - 17593890
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  17593796 caataatcagtctaaaaccctaatatacgattcttaaccctagaatcccttattgtactttttctgcaagtacagttggcgccgtctgtgggaaa 17593890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 15417852 - 15417933
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtggg 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  15417852 agtctaaaaccctaatatacgattcttaaccctagaatccttattgtacctttctgcaagtacagttggcgccgactgtggg 15417933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 8856962 - 8856883
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||||| || | ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8856962 aaaccctaatagatgattcttaaccctagaatccttattgtactttttctgcaagtacagttggcgccgtctgtgggaaa 8856883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 14566259 - 14566172
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  14566259 aaaccctagtatatgattcttagccctagaatctcttattgtactttt-tgcaagtacagttggcgccgtctgtgggaa--cggtaaaact 14566172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 15926721 - 15926643
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||  | |||||||||    
T  15926721 aaaaccctagtatacgattcttaaccctagaatccttattgtactttt-ttcaagtacagttggcgctttatgtgggaaa 15926643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 18556775 - 18556866
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatcctt-attgtacttttg-tgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    |||||||| || |||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||    
T  18556775 aaaccctaatagacgattcttaaccctagaatcctttattgtactttttctgcaagtacagttggcgccgtctgtggaaaatcggtaaaact 18556866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 26907206 - 26907127
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||||| || |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||    
T  26907206 aaaccctaatagacgattcttaaccctagaattcttattgtactttttctgcaagtacagttggcgccgtctgtgggaaa 26907127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 33484858 - 33484754
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaaccggtaaaacttacttgggcc 129  Q
    ||||||||| |||||||||||||||||||||| |||   |||||||  |||||||||||||||||||||||||||| ||||||||||||| ||  |||||    
T  33484858 aaccctagtctacgattcttaaccctagaatctttaccatactttttctgcaagtacagttggcgccgtctgtggg-aaccggtaaaactgacccgggcc 33484760  T
Q  130 acacct 135  Q
    ||||||    
T  33484759 acacct 33484754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 94556 - 94485
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  94556 aataatcagtctaaaaaccctaatatacgattcttaaccctagaatccttattgtacttttatgcaagtaca 94485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 12209109 - 12209031
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||    
T  12209109 aaaccctaatatacgattcctaaccctagaatcccttattgtactttt-tgcaagtatagttggcgccgtctgtgggaaa 12209031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 2689138 - 2689227
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaactt 120  Q
    ||||||| | ||||||||||||||||||||||||||  |||| |||| | ||||||||||||||||||||||||||||| |||||||||||    
T  2689138 aaccctaatctacgattcttaaccctagaatccttaccgtactttttctacaagtacagttggcgccgtctgtgggaaa-cggtaaaactt 2689227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 10776872 - 10776782
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||||| || || |||||||||||||||||||||  |||||||||  ||||||||||| ||||||||||||||||||| ||||||||||    
T  10776872 aaaaccctaatagacaattcttaaccctagaatcctttctgtactttttctgcaagtacagatggcgccgtctgtgggaaa-cggtaaaact 10776782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 11137225 - 11137132
Alignment:
Q  44 gattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaac-cggtaaaacttacttgggccacacct 135  Q
    |||||||| ||||||||||||||  ||||||||  |||||||||||||||||||||||||||||| | |||||||||| || | ||||||||||    
T  11137225 gattcttagccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaacctcggtaaaactaacctaggccacacct 11137132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 14429936 - 14430025
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatcctt-attgtacttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||| |||||||| ||||||| |||||||||||| | |||||||||| ||||| ||||||  ||||||||||||||||||||||||||||    
T  14429936 caataatcagtctaaa-ccctagtttacgattcttaatcttagaatcctttattgtgcttttg--caagtacagttggcgccgtctgtgggaa 14430025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 17601804 - 17601865
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 76  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  17601804 caataatcagtctaaaaccctaatatacgattcttaaccctagaatcccttattgtactttt 17601865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 20012495 - 20012404
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||| |||||||||| ||||| || ||||||||||||||||||||| |||  ||||||||  ||| ||||||||||||||||||||||||||    
T  20012495 caatattgagtctaaa-ccctaatagacgattcttaaccctagaatctttaccgtactttttctgccagtacagttggcgccgtctgtgggaa 20012404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 16091976 - 16092023
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16091976 aaaaccctagtatacgattcttaaccctagaattcttattgtactttt 16092023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 19767688 - 19767616
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacag 88  Q
    |||||| ||||||||||||||  ||| |||||||||||||| ||| ||||||||||||||| |||||||||||    
T  19767688 aataatcagtctaaaaccctaagatatgattcttaaccctataatcccttattgtacttttctgcaagtacag 19767616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 54110948 - 54111002
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagta 85  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  54110948 aaccctagtatacgattcttaaccctagaatcccttattgtactttt-tgcaagta 54111002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 8854115 - 8854069
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  8854115 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 8854069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 12206697 - 12206640
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  12206697 aaaccctaatatacgattcttaaccctagaatcccttattgtactttt-tgcaagtaca 12206640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 26900597 - 26900551
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  26900597 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 26900551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 8368259 - 8368195
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacag 88  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  8368259 agtctaaaatcctaatatacgattcttaaacctagaatcccttattgtactttt-tgcaagtacag 8368195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 19808371 - 19808306
Alignment:
Q  43 cgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaa 107  Q
    |||||||||||| ||||||| |||  ||||||||  ||||||||||||||||||||||||||||||    
T  19808371 cgattcttaaccttagaatctttaccgtactttttctgcaagtacagttggcgccgtctgtgggaa 19808306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 14789735 - 14789661
Alignment:
Q  16 caataatgagtctaaaac-cctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagt 89  Q
    ||||||| |||||||||  |||| | ||||||||| ||||||||||||||||  |||||||| ||||||||||||    
T  14789735 caataatcagtctaaaaatcctaatttacgattctcaaccctagaatccttaccgtacttttctgcaagtacagt 14789661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 5195580 - 5195625
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  5195580 aaccctagtctacgattcttaaccctagaatccttaccgtactttt 5195625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 2692813 - 2692858
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||| | ||||||||||||||||||||||||||  ||||||||    
T  2692813 aaccctaatctacgattcttaaccctagaatccttaccgtactttt 2692858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 14561075 - 14561015
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtacagtt 90  Q
    ||||||||||||| |||||||| ||||| |||| ||||||||| |||| |||||||||||||    
T  14561075 aaaccctagtatatgattcttagccctaaaatctcttattgta-ttttttgcaagtacagtt 14561015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 33481068 - 33481023
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| |||||||||||||||||||||| |||  ||||||||    
T  33481068 aaccctagtctacgattcttaaccctagaatctttaccgtactttt 33481023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 24952 - 25068
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggta 114  Q
    ||||||| ||||||||||||||  ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  24952 caataatcagtctaaaaccctaagatacgtttcttaaccctagaatcctttattgtactttt-tgcaagtacagttggcgccgtctgtggg-aaccggta 25049  T
Q  115 aaacttacttgggccacac 133  Q
    ||||| ||| |||||||||    
T  25050 aaactaactcgggccacac 25068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 27611 - 27683
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatcc-ttattgtacttttgtgcaagtacag 88  Q
    ||||||| | |||||||||||| |||||| |||||||||||||||||| ||| ||||||||| |||||||||||    
T  27611 caataatcaatctaaaaccctaatatacgtttcttaaccctagaatcctttactgtactttt-tgcaagtacag 27683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 78807 - 78887
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  78807 aaaaccctagtatacgattcttaaccctagaatccttactgtactttttgtgcaagtacagttggcgccgtctgtgggaaa 78887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 13013 - 12928
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  13013 agtctaaaaccctagcatacgattctcaaccctagaatccttattgtactttttttgcaagtacagttggcgccgtctgtgggaaa 12928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 44386 - 44305
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtggg 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  44386 agtctaaaaccctaatatacgattcttaaccctagaatccttattgtacctttctgcaagtacagttggcgccgactgtggg 44305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 146796 - 146912
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaa 115  Q
    |||||| ||||||||| ||||||||||||||  ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  146796 aataatcagtctaaaaaccctagtatacgatatttatccctagaatccttattgtacttttatgcaagtacagttggcgccgtctgtggg-aatcggtaa 146894  T
Q  116 aacttacttgggccacac 133  Q
    |||| ||  |||||||||    
T  146895 aactgacccgggccacac 146912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 150003 - 150079
Alignment:
Q  17 aataatgagtctaaa-accctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttgg 92  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  150003 aataatcagtctaaataccctagtatacgattcttaaccatagaatccttattgtacttttatgcaagtacatttgg 150079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 36989 - 37107
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaccggta 114  Q
    ||||||| |||||||| ||| | ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| ||||||||    
T  36989 caataatcagtctaaagcccgaatatacgattcttaaccctagaatcccttattgtactttt-tgcaagtacagttggcgccgtttgtggg-aaccggta 37086  T
Q  115 aaacttacttgggccacacct 135  Q
    ||||| ||| |||| ||||||    
T  37087 aaactaactcgggctacacct 37107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 19577297 - 19577206
Alignment:
Q  16 caataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtggg 105  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  19577297 caataatcagtctaaaaaccctagtatacgattcttaaccctagaatctttattgtactttttctgcaagtacagttggcgccgtctgtggg 19577206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 11231437 - 11231517
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||| |||||||||||||    
T  11231437 aaaaccctagtatacgattcttaaccctaaaatctttattgtactttttatgcaagtacagttggcgtcgtctgtgggaaa 11231517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 19011674 - 19011603
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19011674 aataatcagtctaaaaaccctagaatacgattcttaaccctagaatccttattgtacttttatgcaagtaca 19011603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 4282791 - 4282703
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||| | ||||||||||| ||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  4282791 aaccctaatctacgattcttagccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaaa-cggtaaaact 4282703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 19573676 - 19573616
Alignment:
Q  17 aataatgagtctaaaa-ccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19573676 aataatcagtctaaaaaccctagtatacgattcttaaccctagaatccttattgtactttt 19573616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 8650179 - 8650283
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaac-cggtaaaacttacttgggc 128  Q
    |||||||| || ||||||||||||||||||||||||||  |  |||| ||||||||||||||||| |||||||||||| | |||||||||| || | |||    
T  8650179 aaaccctaatagacgattcttaaccctagaatccttatact--ttttctgcaagtacagttggcgtcgtctgtgggaacctcggtaaaactaacctaggc 8650276  T
Q  129 cacacct 135  Q
    |||||||    
T  8650277 cacacct 8650283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 11694869 - 11694946
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||| | ||||||||||| ||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||    
T  11694869 aaccctaatctacgattcttagccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaa 11694946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 34336131 - 34336054
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtgggaa 107  Q
    ||||||||| ||||||||||| || |||||||||||  ||||||||  ||||||||||||||||||||||||||||||    
T  34336131 aaccctagtctacgattcttagccttagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtgggaa 34336054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 20090479 - 20090427
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  20090479 agtctaaaaccctcgcatacgattctcaaccctagaatccttattgtactttt 20090427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 23607018 - 23606971
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  23607018 aaaaccctagcatacgattcttaaccctagaatccttactgtactttt 23606971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 8668209 - 8668255
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  8668209 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 8668255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 16688686 - 16688732
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  16688686 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 16688732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 22622584 - 22622521
Alignment:
Q  43 cgattcttaaccctagaatccttattgtacttttg-tgcaagtacagttggcgccgtctgtggg 105  Q
    |||||||||| ||||||||| |||  ||||||||  ||||||||||||||||||||||||||||    
T  22622584 cgattcttaatcctagaatctttaccgtactttttctgcaagtacagttggcgccgtctgtggg 22622521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 26460037 - 26460082
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  26460037 aaccctagtctacgattcttaaccctagaatccttaccgtactttt 26460082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 22467666 - 22467726
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagt 89  Q
    |||||||| || |||||||||||| |||||||| ||||||||| |||| ||||||||||||    
T  22467666 aaaccctaatagacgattcttaacactagaatctttattgtactttttctgcaagtacagt 22467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 24065668 - 24065726
Alignment:
Q  78 tgcaagtacagttggcgccgtctgtgggaaac-cggtaaaacttacttgggccacacct 135  Q
    |||||| ||||||||||||||||||||||| | |||||||||| || | ||||||||||    
T  24065668 tgcaagcacagttggcgccgtctgtgggaacctcggtaaaactaacctaggccacacct 24065726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 2258 - 2365
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaac-cggtaaaacttacttgg 126  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||||| || | |    
T  2258 aaaaccctaatatacgattcttaaccctagaatcccttattgtactttt-tgcaagtacagttggcgccgtctttgggaacctcggtaaaactaacctag 2356  T
Q  127 gccacacct 135  Q
    |||||||||    
T  2357 gccacacct 2365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 7670 - 7741
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttgtgcaagtaca 87  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  7670 caataatcagtctaaaaccctagtatacgattcttaaccctagaatccttattgtacttttatgcgagtaca 7741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 135786 - 135707
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaa 108  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  135786 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttt-tgcaagtacagttggcgccgtctgtgggaaa 135707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 133463 - 133405
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtaca 87  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  133463 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttt-tgcaagtaca 133405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 137992 - 137934
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtaca 87  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  137992 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttt-tgcaagtaca 137934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 4362 - 4421
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4362 aataatcagtctaaaaccctagtatacgattcttaaccctagaatccttattgtactttt 4421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1778 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 970 - 892
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaa 107  Q
    |||||||| || ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  970 aaaccctaatagacgattcttaaccctagaatccttagtgtactttttctgcaagtacagttggcgccgtctgtgggaa 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 245294 - 245383
Alignment:
Q  31 aaccctagtatacgattcttaaccctagaatccttattgtac-ttttgtgcaagtacagttggcgccgtctgtgggaaaccggtaaaact 119  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||| |  ||||||||||    
T  245294 aaccctagtctacgattcttaaccctagaatccttaccgtactttttctgcaagtacagttggcgccgtctgtggggactcggtaaaact 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 25775 - 25704
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtaca 87  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  25775 caataatcagtctaaaaccctagtatacgattcttaaccctagaatcacttattgtactttt-tgcaagtaca 25704  T

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Target: scaffold0888 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 4198 - 4274
Alignment:
Q  29 aaaaccctagtatacgattcttaaccctagaatc-cttattgtacttttgtgcaagtacagttggcgccgtctgtggg 105  Q
    |||||||||  ||| ||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||    
T  4198 aaaaccctaaaataagattcttaaccctagaatcacctattgtactttt-tgcaagtacagttggcgccgtctgtggg 4274  T

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Target: scaffold0320 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 12141 - 12212
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||||||    
T  12141 caataatcagtctaaaaccctaatatatgattcttaaccctagaatcccttattgtactttt-tgcaagtaca 12212  T

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Target: scaffold0167 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 10469 - 10398
Alignment:
Q  16 caataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  10469 caataatcagtctaaaaccttaatatacgattcttaaccctagaatcccttattgtactttt-tgcaagtaca 10398  T

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Target: scaffold0202 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 10373 - 10327
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  10373 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 10327  T

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Target: scaffold0202; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 13860 - 13814
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  13860 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 13814  T

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Target: scaffold0130 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 14982 - 14936
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  14982 aaaccctaatagacgattcttaaccctagaatccttattgtactttt 14936  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 96260 - 96200
Alignment:
Q  27 ctaaaaccctagtatacgattcttaaccctagaa-tccttattgtacttttgtgcaagtaca 87  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||    
T  96260 ctaaaaccctaatatacgattcttaaccctagaatttcttattgtactttt-tgcaagtaca 96200  T

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Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 2915 - 2845
Alignment:
Q  17 aataatgagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 87  Q
    |||||| |||||||| ||||| || |||||||||||||||||||| |||||||||||||||  |||||||||    
T  2915 aataatcagtctaaa-ccctaatagacgattcttaaccctagaatcccttattgtacttttcggcaagtaca 2845  T

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Target: scaffold1505 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 423 - 377
Alignment:
Q  30 aaaccctagtatacgattcttaaccctagaatccttattgtactttt 76  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||    
T  423 aaaccctaatagacgattcttaaccctataatccttattgtactttt 377  T

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Target: scaffold0438 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 3899 - 3849
Alignment:
Q  24 agtctaaaaccctagtatacgattcttaaccctagaatcc-ttattgtact 73  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  3899 agtctaaaaccctaatatacgattcttaaccttagaatcctttattgtact 3849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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