View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_62 (Length: 280)
Name: NF9262_low_62
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 41310330 - 41310588
Alignment:
| Q |
3 |
aaaactgacagaataccggcagcnnnnnnnctgcagtacaccgcagcacctaacacaggacagcaccggagcaacttaaaccgtgaatcgatccaggttc |
102 |
Q |
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| T |
41310330 |
aaaactgacagaataccggcagcaaagaaactgcagtacaccgcagcacccaacacaggacagcaccggagcaacttaaaccgtgaatcgatccaggttc |
41310429 |
T |
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| Q |
103 |
taagtcaatcttttcctcaaacccagtcaagattagaatctattgataatattgttgattatttgtagatgctgcaaaaatcagtgttaaagaacaagtt |
202 |
Q |
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| T |
41310430 |
taagtcaatcttttcctcaaacccagtcaagattagaatctattcataatattgttgattatttgtagatgctgcaaaaatcagtgttaaagaacaagtt |
41310529 |
T |
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| Q |
203 |
gttgtgttatcttttagctaaaaattcagttactgtgaaaaaatgacaatgtatgattc |
261 |
Q |
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| T |
41310530 |
gttgtgttatcttttagctaaaaattcagttactgtgagaaaatgacaatgtatgattc |
41310588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 9562186 - 9562043
Alignment:
| Q |
88 |
aatcgatccaggttctaagtcaat---cttttcctcaaacccagtcaagattagaatctat-tg-ataatattgttgattatttgtagatgctgcaaaaa |
182 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||| || ||||||||||||||||||||||||||||||| ||| |
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| T |
9562186 |
aatcgatccaggttctaagtcaataatcttttcctcaaaccaagtcaaaattagaatatatatgcataatattgttgattatttgtagatgctgcagaaa |
9562087 |
T |
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| Q |
183 |
tcagtgttaaagaacaagttgttgtgttatcttttagctaaaaa |
226 |
Q |
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| T |
9562086 |
tcagtgtcaaagaacaagttattgcgttatctttcagctaaaaa |
9562043 |
T |
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