View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_63 (Length: 275)
Name: NF9262_low_63
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 18415819 - 18415702
Alignment:
| Q |
141 |
gcctgttatgttgttgaggaatttagacacaaagaatggtttgtgcaatggaaccaggcttattattactagaatgggaagatatgtttttgagggtagg |
240 |
Q |
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| T |
18415819 |
gcctgttatgttgttgaggaatttagacacaaagaatggtttatgcaatggaaccagacttattataactagaatgggaagatatgtcttagagggcaag |
18415720 |
T |
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| Q |
241 |
gtgatttctggaagtaat |
258 |
Q |
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| T |
18415719 |
gtaatttctggaagtaat |
18415702 |
T |
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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 21799601 - 21799718
Alignment:
| Q |
141 |
gcctgttatgttgttgaggaatttagacacaaagaatggtttgtgcaatggaaccaggcttattattactagaatgggaagatatgtttttgagggtagg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| || ||||| | | |
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| T |
21799601 |
gcctgttatgttgttgaggaatttagacacaaagaatggtttatgcaatggaaccagacttattataactagaatgggaagatatgtcttagagggcaag |
21799700 |
T |
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| Q |
241 |
gtgatttctggaagtaat |
258 |
Q |
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| T |
21799701 |
gtaatttccgaaagtaat |
21799718 |
T |
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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 21001175 - 21001062
Alignment:
| Q |
145 |
gttatgttgttgaggaatttagacacaaagaatggtttgtgcaatggaaccaggcttattattactagaatgggaagatatgtttttgagggtagggtga |
244 |
Q |
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| T |
21001175 |
gttatgttgttgaggaatttagacacaaagaatggtttatgcaatgaaaccagacttattataactagaatgggaagatatgtcttagaggtcaaggtaa |
21001076 |
T |
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| Q |
245 |
tttctggaagtaat |
258 |
Q |
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|||| ||||||||| |
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| T |
21001075 |
tttccggaagtaat |
21001062 |
T |
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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 14984808 - 14984878
Alignment:
| Q |
47 |
cccctgtgaatgttgatttaaattgctggatcttaaagtggcttaactgtaatgatgtgtgaggctcacaa |
117 |
Q |
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| T |
14984808 |
cccctgtgaatgttgatctaaactgctggatcctagagtggctgaactgtaatgatgtttgaggctcacaa |
14984878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 56476217 - 56476161
Alignment:
| Q |
202 |
attattactagaatgggaagatatgtttttgagggtagggtgatttctggaagtaat |
258 |
Q |
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| T |
56476217 |
attattactagaatgggaagatacgtattcgaggggaaggtaatttctggaagtaat |
56476161 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 23263724 - 23263780
Alignment:
| Q |
202 |
attattactagaatgggaagatatgtttttgagggtagggtgatttctggaagtaat |
258 |
Q |
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||||||||||||||||||||||| || | ||||| | ||| ||||||||||||||| |
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| T |
23263724 |
attattactagaatgggaagatacgtaatcgaggggaaggtaatttctggaagtaat |
23263780 |
T |
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