View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_70 (Length: 256)
Name: NF9262_low_70
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 39624338 - 39624565
Alignment:
| Q |
17 |
acttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattattagatgtgaataatccatccaactctgtattggcat |
116 |
Q |
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| T |
39624338 |
acttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattattagatgtgaataatcca----actctgtattggcat |
39624433 |
T |
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| Q |
117 |
gtggtttagcaacnnnnnnnnnnnnnntcattttgaaaatcagaagcaagctttattttcattattaatgcttttaacttacaagttagaattgattaca |
216 |
Q |
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| T |
39624434 |
gtggtttagcaacaaaaaaaaaa----tcattttgaaaatcagaagcaagctttattttcattattaatgcttttaacttacaagttagaattgattaca |
39624529 |
T |
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| Q |
217 |
tggtgtttgagtttgacgattgtagtattatctacc |
252 |
Q |
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| T |
39624530 |
tggtgtttgagtttgacgattgtagtgttatttacc |
39624565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 39633888 - 39634115
Alignment:
| Q |
17 |
acttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattattagatgtgaataatccatccaactctgtattggcat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39633888 |
acttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattattagatgtgaataatcca----actctgtattggcat |
39633983 |
T |
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| Q |
117 |
gtggtttagcaacnnnnnnnnnnnnnntcattttgaaaatcagaagcaagctttattttcattattaatgcttttaacttacaagttagaattgattaca |
216 |
Q |
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| T |
39633984 |
gtggtttagcaacaaaaaaaaaa----tcattttgaaaatcagaagcaagctttattttcattattaatgcttttaacttacaagttagaattgattaca |
39634079 |
T |
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| Q |
217 |
tggtgtttgagtttgacgattgtagtattatctacc |
252 |
Q |
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| T |
39634080 |
tggtgtttgagtttgacgattgtagtgttatttacc |
39634115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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