View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9262_low_8 (Length: 688)
Name: NF9262_low_8
Description: NF9262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9262_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 16 - 670
Target Start/End: Complemental strand, 35094143 - 35093489
Alignment:
| Q |
16 |
acatcatagaatataagtttaatatttttcgcaccttttccttttacaatttccgaaaaaagatctaaatgttaaaaaatgtattgtatattttcctcac |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094143 |
acatcagagaatataagtttaatatttttcgcaccttttccttttacaatttccgaaaaaagatctaaatgttaaaaaatgtattgtatattttcctcac |
35094044 |
T |
|
| Q |
116 |
ttttttccttttacaactaataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaatacaggataccattctataggac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094043 |
atttttccttttacaactaataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaatacaggataccattctataggac |
35093944 |
T |
|
| Q |
216 |
aggaaagccttgactggccaagcaggttgaagatagtgaaaggtgtagcgaaagggattgaatatctatacaaggagttgccgaacttgattgcgcctca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093943 |
aggaaagccttgactggccaagcaggttgaagatagtgaaaggtgtagcgaaagggattgaatatctatacaaggagttgccgaacttgattgcgcctca |
35093844 |
T |
|
| Q |
316 |
tggtcatcttaaatcctcaaatgttctattgaacgagtcattagagcctatactaaccgactacggattagtaccagtgataaaccaggatgttgctcat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093843 |
tggtcatcttaaatcctcaaatgttctattgaacgagtcattagagcctatactaaccgactacggattagtaccagtgataaaccaggatgttgctcat |
35093744 |
T |
|
| Q |
416 |
gaaataatggttatatacgcgtcacctgagtatttacagcacgggaggataacaaagaagactgatgtgtggagtctcggtatactcattttggaaattc |
515 |
Q |
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| T |
35093743 |
gaaataatggttatatacgcgtcacctgagtatttacagcacgggaggataacaaagaagactgatgtgtggagtctcggtatactcattttggaaattc |
35093644 |
T |
|
| Q |
516 |
taaccggaaaacttcctgctaatttcctacaacaaagtggtaaagggagcgagttgagtttagcgaattgggtggattctgttgtaccggaagagtggag |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093643 |
taaccggaaaacttcctgctaatttcctacaacaaagtggtaaagggagcgagttgagtttagcgaattgggtggattctgttgtaccggaagagtggag |
35093544 |
T |
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| Q |
616 |
tagcgaggtttttgataaagatatggagttaacaagtaataatgagggggagatg |
670 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093543 |
tagcgaggtttttgataaagatatggagttaacaagtaataatgagggggagatg |
35093489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 34239772 - 34239714
Alignment:
| Q |
134 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaa |
192 |
Q |
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|||||||||||||||| | || ||| ||||||||| ||||||||||||||||||||||| |
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| T |
34239772 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa |
34239714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
| Q |
134 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatcta |
191 |
Q |
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|||||| ||||||||| |||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
40620 |
aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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