View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9263_high_1 (Length: 600)
Name: NF9263_high_1
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 21 - 567
Target Start/End: Complemental strand, 35745332 - 35744796
Alignment:
| Q |
21 |
ttagctccatgtaacagttctgcttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcctgatctg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35745332 |
ttagctccatgtaacagttctgcttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcct---ctg |
35745236 |
T |
|
| Q |
121 |
ttgtaaaatgacaatcattattcttggnnnnnnnnnnnnnnnatatgtcacattgcagatagttatgagaacactgaatgatctacaaaggctatatcca |
220 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745235 |
ttgtaaaatgacaatcattattcttggtttttttttttt---atatgtcacattgcagatagttatgagaacactgaatgatctacaaaggctatatcca |
35745139 |
T |
|
| Q |
221 |
gagatcataacaaaaactcaactgtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaatt |
320 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745138 |
gagatcataacaaaaactcaagtgtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaatt |
35745039 |
T |
|
| Q |
321 |
attctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgaggctttgaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745038 |
attctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgaggctttgaa |
35744939 |
T |
|
| Q |
421 |
gtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtcaattgggt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744938 |
gtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtcaattgggt |
35744839 |
T |
|
| Q |
521 |
atgttactaatgatcttagatatgcatcaacaatgtaaaaacttctt |
567 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35744838 |
atgttattaatgatct----tatgcatcaacaatgtaaaaacttctt |
35744796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University