View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_high_20 (Length: 239)
Name: NF9263_high_20
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36300434 - 36300212
Alignment:
| Q |
1 |
caacattttgtactaaatagcgtatagcgtcactatatagctgttattttacaacactttaaaatttacatatatttcccaactatattagcgaccaaaa |
100 |
Q |
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| T |
36300434 |
caacattttgtactaaatagcgtatagcgtcactatatagctgttatttaacaacactttaaaatttacatatatttcccaactatattagcgaccaaaa |
36300335 |
T |
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| Q |
101 |
ttatcaagatacttcattacttcattattatcaaacacttgttgacaatttaaaatagttttcctgtggtgttatttgaatcacttaacaaaccactgaa |
200 |
Q |
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| T |
36300334 |
ttatcaagatacttcattacttcattattatcaaacacttgttgacgatttaaaatagttttcctgtggtgttatttgaatcacttaacaaaccactgaa |
36300235 |
T |
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| Q |
201 |
agcaatgtatacacactgatata |
223 |
Q |
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| T |
36300234 |
agcaatgtatacacactgatata |
36300212 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 48298830 - 48298891
Alignment:
| Q |
153 |
aaatagttttcctgtggtgttatttgaatcacttaacaaaccactgaaagcaatgtatacac |
214 |
Q |
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| T |
48298830 |
aaatagttttcctgtggagttatttgaatcacttgacagattactgaatgcaatttatacac |
48298891 |
T |
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