View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_high_25 (Length: 210)
Name: NF9263_high_25
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 1161603 - 1161758
Alignment:
| Q |
30 |
tcaagattaagtctttgtaattaactgttcctaagctaagttagccgagggaatattttgctgctatgtgtatgtgttgaagcccatgctgcttatgata |
129 |
Q |
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| T |
1161603 |
tcaagatcaggtctttgtaattaactgttcttaagcttagttagccgagggaatgttttgctgctatgtgtatgtgttgaagaccatgctg-------ta |
1161695 |
T |
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| Q |
130 |
gctgacttggttatgtgcattgcatagcacatggatggttcctttctgactcactctacgtct |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
1161696 |
gctgacttggttatgtgcattgcatagcacatggatggttcctttctcactcactctatgtct |
1161758 |
T |
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Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 879633 - 879473
Alignment:
| Q |
30 |
tcaagattaagtctttgtaattaactgttcctaagctaagttagccgagggaatattttgctgctatgtgtatgtgttgaagcccatgctgcttatgata |
129 |
Q |
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||||||| | ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
879633 |
tcaagatcaggtctttgtaattaactgttccaaagctttattagcagagggaatattttgctgctatgtgtatgtgttgaagatcatgctgcttatggta |
879534 |
T |
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| Q |
130 |
gctgacttggttatgtgcattgcatagcacatggatggttcctttctgactcactctacgtc |
191 |
Q |
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||||| |||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||| |
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| T |
879533 |
gctgaattggttatgtgcattgcatagcacat-gatgcttcctttctcactcattctacgtc |
879473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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