View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9263_high_27 (Length: 203)
Name: NF9263_high_27
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_high_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 35939432 - 35939601
Alignment:
| Q |
20 |
gtaaggtgaccattctgaacgccctgaccattggtatcaatttgattgaagacattcacatctaagtcaagtccaccattagagcattggtccactattc |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
35939432 |
gtaaggtgaccattctgaacgccctgtccattggtatcaatttgattgaagacattcacatctaagtcaagtccaccgttggagcattggtccactattc |
35939531 |
T |
|
| Q |
120 |
tcactgttacctgagctccagttgcagtatttgtcacctgcatcgttaatcatcaccacaatagtattat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
35939532 |
tcactgttacctgagctccagttgcagtatttgtcacctgcatcattagtcatcaccacaatattattat |
35939601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 35952599 - 35952730
Alignment:
| Q |
47 |
ccattggtatcaatttgattgaagacattcacatctaagtcaagtccaccattagagcattggtccactattctcactgttacctgagctccagttgcag |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | |||||||| | ||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
35952599 |
ccattggtatcaatttgattgaagacattcacatccaagtctaacccaccattggcacattggtccactattcttactgttgcctgagctccagttgcag |
35952698 |
T |
|
| Q |
147 |
tatttgtcacctgcatcgttaatcatcaccac |
178 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |
|
|
| T |
35952699 |
tatttgtcacctgcatcattagtcatcaccac |
35952730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 35946448 - 35946570
Alignment:
| Q |
41 |
ccctgaccattggtatcaatttgattgaagacattcacatctaagtcaagtccaccattagagcattggtccactattctcactgttacctgagctccag |
140 |
Q |
| |
|
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
35946448 |
ccctgtccattggtatcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccag |
35946547 |
T |
|
| Q |
141 |
ttgcagtatttgtcacctgcatc |
163 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
35946548 |
ttgcagtatttttcacctgcatc |
35946570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University