View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_1 (Length: 642)
Name: NF9263_low_1
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 19 - 642
Target Start/End: Original strand, 1177403 - 1178020
Alignment:
| Q |
19 |
ataccattctggagctctaggttcaatgttgaacttcttacaaaaaggaacccatttccttgcaaattcagaagtttcagataatgcctcaaatgttaac |
118 |
Q |
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| T |
1177403 |
ataccattctggagctctaggttcaatgttgaacttcttacaaaaaggaacccatttccttgcaaattcagaagtttcagataatgcctcaaatgttaac |
1177502 |
T |
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| Q |
119 |
attgctgctccatcatcagaaacataacatgacaccttttcagcagggtaatctattgctagaattgatagaactgtgtttgctgtcactagaggagatt |
218 |
Q |
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| T |
1177503 |
attgctgctccatcatcagaaacataacatgacaccttttcagcagggtaatctattgctagaattgatagaactgtgtttgctgtcactagaggagatt |
1177602 |
T |
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| Q |
219 |
cttttaatggatcatttgtagtcacaaatatatcaattggtgaaagttgtgatggttgaccttccttttcatacctatgtgaataagaaaaagttgttta |
318 |
Q |
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| T |
1177603 |
cttttaatggatcatttgtagtcacaaatatatcaattggtgaaagttgtgatggttgaccttccttttcatacctatgtgaataagaaaaagttgttta |
1177702 |
T |
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| Q |
319 |
taaacaaaaacataaacatgaaaagaaagtactgatttttacaggatatggaccctaatatttcagtatccaatcccgatcggaagtaagtaaagtccag |
418 |
Q |
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| T |
1177703 |
taaacaa------aaacatgaaaagaaagtactgatttttacaggatatggaccctaatatttcagtatccaatcccgatcggaagtaagtaaagtccgg |
1177796 |
T |
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| Q |
419 |
taaaaaattataccaactaggatttaaattagtactattnnnnnnngttgattacttgccttaaggaaagtctgtcaagataggtttccctcatgacagg |
518 |
Q |
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| T |
1177797 |
taaaaaattataccaacttggatttaaattagtactattaaaaaaagttgattacttgccttaaggaaagtctgtcaagataggtttccctcatgacagg |
1177896 |
T |
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| Q |
519 |
aaaccactttgagaactgatcaagaatccatgaaagagtgaaccaaatctcacatattactgacacaagccacaaagcataagcattgtctactggatgc |
618 |
Q |
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| T |
1177897 |
aaaccactttgagaactgatcaagaatccatgaaagagtgaaccaaatctcacatattactgacacaagccacaaagcataagcattgtctactggatgc |
1177996 |
T |
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| Q |
619 |
ataattctatattggaagaagaat |
642 |
Q |
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| T |
1177997 |
ataattctatattggaagaagaat |
1178020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 44377527 - 44377690
Alignment:
| Q |
38 |
ggttcaatgttgaacttcttacaaaaaggaacccatttccttgcaaattcagaagtttcagataatgcctcaaatgttaacattgctgctccatcatcag |
137 |
Q |
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| T |
44377527 |
ggttcaatgctgaacttcttgcagaatggaacccattttcttgcaaactctgaagtttctgaaagggcttcaaatgttagcatagctgcaccgtcgtctg |
44377626 |
T |
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| Q |
138 |
aaacataacatgacaccttttcagcagggtaatctattgctagaattgatagaactgtgtttgc |
201 |
Q |
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| T |
44377627 |
agacatagcacgccactttttccaccggataatctactgctaggatggacagaactgtgtttgc |
44377690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 38721005 - 38721101
Alignment:
| Q |
53 |
ttcttacaaaaaggaacccatttccttgcaaattcagaagtttcagataatgcctcaaatgttaacattgctgctccatcatcagaaacataacatg |
149 |
Q |
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| T |
38721005 |
ttcttgcaaaacggaacccacttcctagcaaattcagatgtctcagaaagtgcttcaaaagttagcatagcagcaccatcatccgaaacatagcatg |
38721101 |
T |
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