View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_10 (Length: 529)
Name: NF9263_low_10
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 8337561 - 8338079
Alignment:
| Q |
1 |
tatataatatgctgtctacatcatttattgaatgaacttaaaa-atggtttaatgcttataatagtgatcaaaatgtgtagtaaatataataacaatatt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8337561 |
tatataatatgctgtctacatcatttattgaatgaacttaaaaaatggtttaatgcttataatagtgatcgaaatgtgtagtaaatataataacaatatt |
8337660 |
T |
|
| Q |
100 |
ttcatttccatttaatgcaacttctccactcttagaaacaagactaagctatataattttgatgtttttcttaaagagttttgcaaaagaaaactcttaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8337661 |
ttcatttccatttaatgcaacttctccactcttagaaacaagactaggctatataattttgatgtttttcttaaagagttttgtaaaagaaaactcttaa |
8337760 |
T |
|
| Q |
200 |
agaacaaacaaagtttagtacttactctcgtaataaaacatatcgacatatgttttcacttaatttcagaaaga-tagacaatataatttctgccattca |
298 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8337761 |
agaacaaacaaagtttagtacttactcttgtaataaaacatatcgaaatatgttttcacttaatttcagaaagactagacaatataatttctgccattca |
8337860 |
T |
|
| Q |
299 |
ttggagtcaaaaagaaaatattaatttccattccttcattaaatgacacataatattgaccctcacttt---agaagatgatactgtacattagtatata |
395 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8337861 |
ttggagtcaaaaagaaaatattaatttctattccttcattaaatgacacataatattgaccctcactttagaagaagatgatactgtacattagtatata |
8337960 |
T |
|
| Q |
396 |
tatagagtgcaacaaagagatgcacatcaaagtaacaaaccacattgttatcagtacaactgagacaatgtgtacattgtcttttctcttgacaacctta |
495 |
Q |
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| T |
8337961 |
tatagagtgcaacaaagagatgcacatcaaagtaacaaaccacattgttattagtacaactgagacaatgtgtacattgtcttttctcttgacaacctta |
8338060 |
T |
|
| Q |
496 |
acaattttcatgtctattt |
514 |
Q |
| |
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|||||||| |||||||||| |
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| T |
8338061 |
acaatttttatgtctattt |
8338079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 510
Target Start/End: Original strand, 36100070 - 36100188
Alignment:
| Q |
392 |
tatatatagagtgcaacaaagagatgcacatcaaagtaacaaaccacattgttatcagtacaactgagacaatgtgtacattgtcttttctcttgacaac |
491 |
Q |
| |
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||||||||||| ||||||| |||||||||| | |||||||||||||| || | | ||||| | || |||||| | | |||| ||||||||||||||| |
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| T |
36100070 |
tatatatagagcgcaacaatgagatgcacaaccaagtaacaaaccacgtttctgttagtaccatggaaacaatgagagcgttgttttttctcttgacaac |
36100169 |
T |
|
| Q |
492 |
cttaacaattttcatgtct |
510 |
Q |
| |
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|
| T |
36100170 |
cttaacaattttcatgtct |
36100188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 3106028 - 3106080
Alignment:
| Q |
17 |
tacatcatttattgaatgaacttaaaaatggtttaatgcttataatagtgatc |
69 |
Q |
| |
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||||||||||||||||||||| ||||| | |||| || |||||||||||||| |
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|
| T |
3106028 |
tacatcatttattgaatgaacctaaaagttgttttttgtttataatagtgatc |
3106080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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