View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9263_low_12 (Length: 438)

Name: NF9263_low_12
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9263_low_12
NF9263_low_12
[»] chr5 (1 HSPs)
chr5 (19-421)||(19032289-19032693)
[»] chr7 (4 HSPs)
chr7 (311-397)||(46994410-46994496)
chr7 (311-389)||(24681652-24681730)
chr7 (336-401)||(7775043-7775108)
chr7 (337-401)||(19494412-19494476)
[»] chr4 (4 HSPs)
chr4 (311-389)||(28304063-28304141)
chr4 (311-397)||(5027443-5027529)
chr4 (337-401)||(13069984-13070047)
chr4 (337-401)||(47237814-47237878)
[»] chr8 (3 HSPs)
chr8 (337-397)||(35689527-35689587)
chr8 (318-401)||(16314329-16314412)
chr8 (361-401)||(31301158-31301198)
[»] chr3 (1 HSPs)
chr3 (337-397)||(43657069-43657129)


Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 19032289 - 19032693
Alignment:
Q  19 gaatatccattaaaaacctttttacattgtcacagatttacacctattcctcattccttgttttttgtgtgttttcaagatcttatatgtttctctggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19032289 gaatatccattaaaaacctttttacattgtcacagatttacacctattcctcattccttgttttttgtgtgttttcaagatcttatatgtttctctggat 19032388  T
Q  119 cagtaaacttttgggtcaaaaatatatgaccagctgtttttgatctattttatagaggccaatgtgtggttttttcttctctttctattctgtttatatg 218  Q
    |||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19032389 cagtaaacttttggatcaaaaatatatgactagttatttttgatctattttatagaggccaatgtgtggttttttcttctctttctattctgtttatatg 19032488  T
Q  219 aatcac--tgtgcgacttattttttaacaataggcaatgattggtaaaattctgcaaagac--ctgttttttatactctatttaacaaccactctctatt 314  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| | ||| ||||||||  ||| ||||||||    
T  19032489 aatcactatgtgcgacttattttttaacaataggcaatgattggtaaaattctgcaaagaccactttttttaaaactatatttaac--ccagtctctatt 19032586  T
Q  315 gacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagttgttcatgacatt 414  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19032587 gacttaaatcaagatgagtcacacactttaaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagttgttcataacatt 19032686  T
Q  415 tctctgc 421  Q
    |||||||    
T  19032687 tctctgc 19032693  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 46994410 - 46994496
Alignment:
Q  311 tattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaa 397  Q
    ||||| ||||||||| | || ||| ||||||||| |||||||| | ||||||||||||||  |||| || ||||||||| |||||||    
T  46994410 tattggcttaaatcatggtgggtctcacactttggaaatggatatcacttaaagtggtgggtcatacattgatttcatctaataaaa 46994496  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 24681730 - 24681652
Alignment:
Q  311 tattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatc 389  Q
    |||||||||||||||||| | ||| |||||||| ||||||  ||| |||||||||| ||| ||||| ||  ||||||||    
T  24681730 tattgacttaaatcaagacgggtctcacactttaaaaatgagtcttacttaaagtgatgggacatacattaatttcatc 24681652  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 7775108 - 7775043
Alignment:
Q  336 cacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt 401  Q
    |||||||||||||| || || ||  |||||||||| ||||| || ||||||||| |||||||||||    
T  7775108 cacactttgaaaattgaactcacacaaagtggtgggacatacattgatttcatccaataaaagagt 7775043  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 19494412 - 19494476
Alignment:
Q  337 acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt 401  Q
    |||||||||||||||| |  || ||||||||||| ||||| || ||||||| | |||||||||||    
T  19494412 acactttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagt 19494476  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 28304063 - 28304141
Alignment:
Q  311 tattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatc 389  Q
    ||||||||||||||||| ||  |||||||||||||||||||| |  ||| |||||||||| ||||  || |||||||||    
T  28304063 tattgacttaaatcaaggtggatcacacactttgaaaatggaccccactaaaagtggtgggacatgcattgatttcatc 28304141  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 5027443 - 5027529
Alignment:
Q  311 tattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaa 397  Q
    ||||| |||||||||||||||||| |||| ||||||||| |||   |||||||||| |||  |||| || |||| |||| |||||||    
T  5027443 tattggcttaaatcaagatgagtctcacattttgaaaatcgattcaacttaaagtgatgggtcatatattgattacatccaataaaa 5027529  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 401
Target Start/End: Complemental strand, 13070047 - 13069984
Alignment:
Q  337 acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt 401  Q
    |||||||||||||||| |  || ||||||||||||||||| || ||||||| | |||||||||||    
T  13070047 acactttgaaaatggaacccacataaagtggtggaacatacattgatttca-ccaataaaagagt 13069984  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 47237814 - 47237878
Alignment:
Q  337 acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt 401  Q
    |||||||||||||| | || |  ||||||||||| ||||| || ||||||||| |||||||||||    
T  47237814 acactttgaaaatgaaacttatataaagtggtgggacatatattgatttcatccaataaaagagt 47237878  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 35689587 - 35689527
Alignment:
Q  337 acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaa 397  Q
    |||||||||||||||| || || ||||||||||| ||||| || ||||||||| |||||||    
T  35689587 acactttgaaaatggaactcacataaagtggtgggacatacattgatttcatccaataaaa 35689527  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 16314329 - 16314412
Alignment:
Q  318 ttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt 401  Q
    |||||||||| || ||| |||| ||| |||||||||   |||||||||||||||||||| ||  |||| ||| |||||||||||    
T  16314329 ttaaatcaaggtgggtctcacattttaaaaatggattcaacttaaagtggtggaacatacattaattttatccaataaaagagt 16314412  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 31301198 - 31301158
Alignment:
Q  361 aaagtggtggaacatagatcgatttcatcgaataaaagagt 401  Q
    |||||||||||||||| || ||||||||| |||||||||||    
T  31301198 aaagtggtggaacatacattgatttcatccaataaaagagt 31301158  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 43657069 - 43657129
Alignment:
Q  337 acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaa 397  Q
    |||||||| ||||||| || || ||||||||||| ||||| || ||||||||| |||||||    
T  43657069 acactttggaaatggaactcacataaagtggtgggacatacattgatttcatcaaataaaa 43657129  T

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