View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_13 (Length: 400)
Name: NF9263_low_13
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 53113471 - 53113099
Alignment:
| Q |
18 |
attcctacccctagccatatatatttgnnnnnnnnn-gctaaaacgtgcataccaagtttcnnnnnnnacatgcatatatatttggaataatttatcagc |
116 |
Q |
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| T |
53113471 |
attcctacccctagccatatatatttgaaaaaaaaaagctaaaacgtgcataccaagtttctttttttacatgcatatatatttggaataatttatcggc |
53113372 |
T |
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| Q |
117 |
caacaataaaaggaatcagttacatttagcacaacatagagggagggaattgaaggtcactgcaaaatcataaattgtagttttaattgctttgtctaat |
216 |
Q |
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| T |
53113371 |
caacaataaaaggaatcagttacatttagcacaacatagagggagggaattgaaggtcactgcaaaatcataaattgtagttttaattgctttgtctaat |
53113272 |
T |
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| Q |
217 |
ttgatttggttgatgatagaagctaattcgtcaaagcctacatctctggaaaccaccaagagcgtaagcagtgcattgacgagtgaacggaacagacagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53113271 |
ttgatttggttgatgatagaagctaattcgtcaaagcctacatctctggaaaccaccaagagcgtaagcagtgcattgacga-tgaacggaacagacagg |
53113173 |
T |
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| Q |
317 |
tcactctctttcccattctcaatcttcatttcctttgattaggattagttgctgattaagattagttgtctctg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53113172 |
tcactctctttcccattctcaatcttcatttcctttgattaggattagtttctgattaagattagttgtctctg |
53113099 |
T |
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