View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_14 (Length: 382)
Name: NF9263_low_14
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_14 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 21590719 - 21590345
Alignment:
| Q |
1 |
actatcttcacatagctcgacaaaaacaattaccccacgaacctaaggtctcgaaagacttgtaagcaattatgacatgaattgacctcaaattagatac |
100 |
Q |
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| T |
21590719 |
actatcttcacatagctcgacaaaaacaattaccccacgaacctaaggtctcgaaagacttgtaagcaattatgacatgaattgacctcaaattagatac |
21590620 |
T |
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| Q |
101 |
tttggttgattgagtgataaaaagaaatgcaggctcaaattttcatctgtatgggaacatttctacatgattatatgaactattagcataaatgttttgt |
200 |
Q |
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| T |
21590619 |
cttggttgattgagcgataaaaagaaatgtaggctcaaattttcatctgtatgggaacatttctacatgattatatgaactattagcataaatgttttgt |
21590520 |
T |
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| Q |
201 |
acaagcagcttagtatttatatacactaaattttggtgaattttacattgttataacataaaatgtgacaatatatgacatgcctaggtgcatgtaaaaa |
300 |
Q |
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| T |
21590519 |
acaagcagcttagtgtttatatacactaaattttggtgaattttacattgttataacataaaatgtgacaatatatgacatgcctaggtgcatgtaaaaa |
21590420 |
T |
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| Q |
301 |
atttgataccatttcaaaaagtgagacaatagccaattttgttttcatgttcattcctcatgttgatgtccatct |
375 |
Q |
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| T |
21590419 |
atttgataccatttcaaaaagtgagacaatagccaattttgttttcatgttcattcctcatgttcatgttcatct |
21590345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 90 - 356
Target Start/End: Original strand, 9719 - 9986
Alignment:
| Q |
90 |
aaattagatactttggttgattgagtgataaaaagaaatgcaggctcaaattttcatctgtatgggaacatttctacatgattatatgaactattagca- |
188 |
Q |
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|||||| |||| |||||||||||||||| |||||||| ||||||||||||||| ||||| | |||||||||||| ||| ||||| |||||||| |
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| T |
9719 |
aaattacatacattggttgattgagtgaccaaaagaaagaggggctcaaattttcatatgtattg-aacatttctacacaattttatgatatattagcag |
9817 |
T |
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| Q |
189 |
--taaatgttttgtacaagcagcttagtatttatatacactaaattttggtgaattttacattgttataacataaaatgtgacaatatatgacatgccta |
286 |
Q |
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||||| | ||||||| || || | |||| |||||||| |||| |||||||||||| || || ||||||||||||||||||||| ||||||||| |
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| T |
9818 |
cataaataatacgtacaaggagtttcttgtttacatacactag-ttttcgtgaattttaca--gtcattacataaaatgtgacaatatataacatgccta |
9914 |
T |
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| Q |
287 |
ggtgcatgtaaaaaatttgataccatttc--aaaaagtgagacaatagccaattttgttttcatgttcattc |
356 |
Q |
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| T |
9915 |
ggtgcgtgtaaaaaatttgataccatgtcgaacaaagtgagacattatccgatcttattttcatgctcattc |
9986 |
T |
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