View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_17 (Length: 364)
Name: NF9263_low_17
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 162 - 347
Target Start/End: Complemental strand, 18014063 - 18013878
Alignment:
| Q |
162 |
tgacacagccgaaatgaaattcttatagcttgagctatataactcatttatgagtgaagccagttgcattggaaagttagcttatagttttatgatactc |
261 |
Q |
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| T |
18014063 |
tgacatagccggaataaaattcttataacttgagctatataactcatatatgagcgaagccagttgcattggaaagttagcttatagttttatgatactc |
18013964 |
T |
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| Q |
262 |
gaaagttgtgaaattttatattactttaacattattttgtgatattatgaagtggattgttatgttttacaaattactctgcatca |
347 |
Q |
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| T |
18013963 |
aaaagttgtgtaattttatattactttaacattattttgtgatattatgaagtggattgttatgttttacaaattactctgcatca |
18013878 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 31909094 - 31908990
Alignment:
| Q |
243 |
ttatagttttatgatactcgaaagttgtgaaattttatattactttaacattattttgtgatattatgaagtggattgttatgttttacaaattactctg |
342 |
Q |
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| T |
31909094 |
ttatagtattatgatacttgaaagttgtgtaattttatattatttgtacattatttcgtaacattatgaaatgaattgttctgttttgcaagttaatgtg |
31908995 |
T |
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| Q |
343 |
catca |
347 |
Q |
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| T |
31908994 |
catca |
31908990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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