View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_18 (Length: 353)
Name: NF9263_low_18
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_18 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 49445472 - 49445401
Alignment:
| Q |
1 |
acagtggtataagagttgtattggtgactgattttgaagtgttttacaaggaagaatagagataagttgtca |
72 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49445472 |
acagtggtataagtgttgcattggtgactgattttgaagtgttttacaatgaagaatagagataagttgtca |
49445401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 24208213 - 24208159
Alignment:
| Q |
4 |
gtggtataagagttgtattggtgactgattttgaagtgttttacaaggaagaata |
58 |
Q |
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| T |
24208213 |
gtggtaaaggagctgtgttggtgattgattttgaagtgttttacagggaagaata |
24208159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 45027993 - 45027939
Alignment:
| Q |
4 |
gtggtataagagttgtattggtgactgattttgaagtgttttacaaggaagaata |
58 |
Q |
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| T |
45027993 |
gtggtaaaggagctgtgttggtgattgattttgaagtgttttacagggaagaata |
45027939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 45032841 - 45032787
Alignment:
| Q |
4 |
gtggtataagagttgtattggtgactgattttgaagtgttttacaaggaagaata |
58 |
Q |
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| T |
45032841 |
gtggtaaaggagctgtgttggtgattgattttgaagtgttttacagggaagaata |
45032787 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 40272474 - 40272520
Alignment:
| Q |
8 |
tataagagttgtattggtgactgattttgaagtgttttacaaggaag |
54 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40272474 |
tataagagttgtattggtgactgattttgaagtgttttacatggaag |
40272520 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 16592815 - 16592769
Alignment:
| Q |
8 |
tataagagttgtattggtgactgattttgaagtgttttacaaggaag |
54 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
16592815 |
tataagagttgtgttggtgactgattttgaagtgttttacatggaag |
16592769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 33164229 - 33164175
Alignment:
| Q |
4 |
gtggtataagagttgtattggtgactgattttgaagtgttttacaaggaagaata |
58 |
Q |
| |
|
|||||| | ||| ||| ||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
33164229 |
gtggtaaaggagctgtgttggtgattgattttgaagtgttttacagggaagaata |
33164175 |
T |
|
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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 30071 - 30031
Alignment:
| Q |
8 |
tataagagttgtattggtgactgattttgaagtgttttaca |
48 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
30071 |
tataagagttgtgttggtgactgattttgaagtgttttaca |
30031 |
T |
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Target: scaffold0134 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 36797 - 36745
Alignment:
| Q |
5 |
tggtataagagttgtattggtgactgattttgaagtgttttacaaggaagaat |
57 |
Q |
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|||||||| | |||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
36797 |
tggtataaaacttgtgttggggactgattttgaagtgttttacagggaagaat |
36745 |
T |
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