View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_20 (Length: 340)
Name: NF9263_low_20
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_20 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: scaffold0393 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 12736 - 12428
Alignment:
| Q |
14 |
agatattggtcttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcacagtttcaatcaagggaatgaatgattccttacactgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12736 |
agatattggtcttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcacagtttcaatcaagggaatgaatgattccttacactgt |
12637 |
T |
|
| Q |
114 |
catgaaaatttacaaaacgaacaatattaatatattttagccaacaattagatgcaaccaatgaagcaaacatagacacgaacaggacactaacatgtaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12636 |
catgaaaatttacaaaacgaacaatattaatatattttagccaacaattagatgcaaccaatgaagcaaacatagacacgaacaggacactaacatgtaa |
12537 |
T |
|
| Q |
214 |
acgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttg |
313 |
Q |
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|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12536 |
acgcagacacaaatttgagaaaatgaaagtgattactttatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaaattattttg |
12437 |
T |
|
| Q |
314 |
acatgtttg |
322 |
Q |
| |
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||||||||| |
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| T |
12436 |
acatgtttg |
12428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 2410359 - 2410051
Alignment:
| Q |
14 |
agatattggtcttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcacagtttcaatcaagggaatgaatgattccttacactgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410359 |
agatattggtcttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcacagtttcaatcaagggaatgaatgattccttacactgt |
2410260 |
T |
|
| Q |
114 |
catgaaaatttacaaaacgaacaatattaatatattttagccaacaattagatgcaaccaatgaagcaaacatagacacgaacaggacactaacatgtaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2410259 |
catgaaaatttacaaaacgaacaatattaatatattttagccaacaattagatgcaaccaatgaagcaaacatagacacaaacaggacactaacatgtaa |
2410160 |
T |
|
| Q |
214 |
acgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |
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| T |
2410159 |
acgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggtggagtcaaaattgtttctaaaggtgtaaaaatttattttg |
2410060 |
T |
|
| Q |
314 |
acatgtttg |
322 |
Q |
| |
|
||||||||| |
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|
| T |
2410059 |
acatgtttg |
2410051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 52925807 - 52925732
Alignment:
| Q |
246 |
ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttg |
322 |
Q |
| |
|
|||||||||||| | || ||||||||||||| ||||||||| ||||| |||||| | || | ||||||||||||||| |
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|
| T |
52925807 |
ttagtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgt-ataattgattttgacatgtttg |
52925732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 3845305 - 3845232
Alignment:
| Q |
249 |
gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttgt |
323 |
Q |
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||||||||||| || ||||||||||| || |||||||| ||||| |||||| | || | |||||||||||||||| |
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| T |
3845305 |
gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgt-agaattgattttgacatgtttgt |
3845232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 30598391 - 30598231
Alignment:
| Q |
25 |
ttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcacagtttcaatcaagggaatgaatgattccttacactgtcatgaaaattt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| || |||||||| |||||||| ||||||| ||||| |
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| T |
30598391 |
ttttttcctggattcccctgtaacctaaacaaatggagaatatgcacatcacaatttgaatcaacggcatgaatgagtccttacattgtcatgcaaattc |
30598292 |
T |
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| Q |
125 |
acaaaacgaacaatattaatatattttagccaacaattagatgcaaccaatgaagcaaaca |
185 |
Q |
| |
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|| | | |||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
30598291 |
ccagagccaacaatattattatattttagccaactattagctgcaaccaatgaagcaaaca |
30598231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 29240646 - 29240575
Alignment:
| Q |
248 |
agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtt |
320 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||||||| ||||| |||||| |||| | ||||||||||||| |
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| T |
29240646 |
agtgtatgtttggttccacttttgggggaatcaaaattgattctagaggtgt-aaaattgattttgacatgtt |
29240575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 47596490 - 47596440
Alignment:
| Q |
248 |
agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtg |
298 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||| || |||||||| |
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|
| T |
47596490 |
agtgtatgtatggtttcacttttggaggaatcaaaattgattttaaaggtg |
47596440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 2635054 - 2635127
Alignment:
| Q |
248 |
agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttg |
322 |
Q |
| |
|
|||||||||||| |||||||||| |||| | |||||||| ||||| | |||| |||| | ||||||||||||||| |
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| T |
2635054 |
agtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgt-aaaattgattttgacatgtttg |
2635127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 50375644 - 50375573
Alignment:
| Q |
248 |
agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttg |
322 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||| || || ||||||| || |||||||||||||||| |
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| T |
50375644 |
agtgtatgtttgattctacttttggatgagtcaaaattgattttagaggtgtataa---tattttgacatgtttg |
50375573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 276
Target Start/End: Complemental strand, 33504599 - 33504568
Alignment:
| Q |
245 |
attagtgtatgtttgatttcacttttggagga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
33504599 |
attagtgtatgtttgatttcacttttggagga |
33504568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 20721108 - 20721057
Alignment:
| Q |
249 |
gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgta |
300 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
20721108 |
gtgtatgttttgttccacttttggaggaatcaaaattgattctagaggtgta |
20721057 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 10898619 - 10898657
Alignment:
| Q |
254 |
tgtttgatttcacttttggaggaatcaaaattgtttcta |
292 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||| |
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| T |
10898619 |
tgttcgatttcacttttggaggaatcaaaattgattcta |
10898657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 42982443 - 42982491
Alignment:
| Q |
246 |
ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaa |
294 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||| ||||||| |
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| T |
42982443 |
ttagtgtatgtttggttccacttttggaggaatccaaattaattctaaa |
42982491 |
T |
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