View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_23 (Length: 330)
Name: NF9263_low_23
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 16956057 - 16956375
Alignment:
| Q |
1 |
tctaaattctagatgtttaaactttgtaatttgtaaggcttggcttatttactataataattctgctcatcgttttactgctttattcattgaggttaac |
100 |
Q |
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| T |
16956057 |
tctaaatttgagatgtttaaactttgtaatttgtaaggcttggcttatttactataataatactgctcatcgttttactgctttattcattgaggttaac |
16956156 |
T |
|
| Q |
101 |
acagtttataaatattgtagttcagaaaatcaccacagatgcctattattttacaagttacttggctacactagttagcttgttcaaattgaactgtgtt |
200 |
Q |
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| T |
16956157 |
acagtttataaatattgtagttcagaaaatcaccacagatgcctattattttacaagttacttggctacactagttagcttgttcaaattgaactgtgtt |
16956256 |
T |
|
| Q |
201 |
cctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatgggaaggaaagaagaaa---tctgtggttaacat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
16956257 |
cctgtcctggataatggaattgaaagtgtaatttttctat--gacattacaatttataaacatgatgggtaggaaagaagaaatactatgtggttaacat |
16956354 |
T |
|
| Q |
298 |
ggtgatactcctacacaggtt |
318 |
Q |
| |
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| T |
16956355 |
ggtgatactcctacacaggtt |
16956375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 16935048 - 16934978
Alignment:
| Q |
199 |
ttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatggg |
269 |
Q |
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| T |
16935048 |
ttccagtcctggataatggaatcgaaagtgcagctttgcaatgtcatattacaatttataaatatgatggg |
16934978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 26633720 - 26633834
Alignment:
| Q |
194 |
ctgtgttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatgggaaggaaagaa-gaaatctgtggtt |
292 |
Q |
| |
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||||||||| ||| |||||||||||||||||||| ||| ||| | || ||||||||||| |||||||||||||| | | || ||| ||||||||||| | |
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| T |
26633720 |
ctgtgttccagtcttggataatggaattgaaagtctaactttgcaatgtcatattacaatatataaacatgatggtacgtaaggaaggaaatctgtggat |
26633819 |
T |
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| Q |
293 |
aacatggtgatactc |
307 |
Q |
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||||| || |||||| |
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| T |
26633820 |
aacattgtaatactc |
26633834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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