View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9263_low_27 (Length: 322)

Name: NF9263_low_27
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9263_low_27
NF9263_low_27
[»] chr1 (4 HSPs)
chr1 (5-255)||(45320456-45320706)
chr1 (15-255)||(41466213-41466457)
chr1 (209-255)||(41465236-41465282)
chr1 (209-249)||(35972602-35972642)
[»] chr7 (4 HSPs)
chr7 (38-224)||(12138971-12139158)
chr7 (215-255)||(31235166-31235206)
chr7 (206-247)||(41236797-41236838)
chr7 (213-247)||(31234124-31234158)
[»] chr8 (2 HSPs)
chr8 (116-226)||(26520892-26521004)
chr8 (212-247)||(2320220-2320255)
[»] chr3 (8 HSPs)
chr3 (116-247)||(34826626-34826758)
chr3 (209-255)||(34872965-34873011)
chr3 (209-255)||(37242996-37243042)
chr3 (209-255)||(1259708-1259754)
chr3 (213-247)||(1258673-1258707)
chr3 (213-247)||(34873693-34873727)
chr3 (209-247)||(44445498-44445536)
chr3 (209-256)||(41638479-41638526)
[»] chr5 (2 HSPs)
chr5 (209-247)||(3135931-3135969)
chr5 (214-247)||(27645843-27645876)
[»] chr4 (3 HSPs)
chr4 (209-255)||(16984326-16984372)
chr4 (60-180)||(29059268-29059388)
chr4 (209-247)||(52720605-52720643)
[»] chr6 (1 HSPs)
chr6 (212-247)||(18246185-18246220)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 45320706 - 45320456
Alignment:
Q  5 aggaggagcagagaagaatggagtggagctgctaccgtgttttgtgtgtttggattttgtggtgtgaatagttattttttaagaatgggaggtgtggttc 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45320706 aggaggaggagagaagaatggagtggagctgctaccgtgttttgtgtgtttggattttgtggtgtgaatagttattttttaagaatgggaggtgtggttc 45320607  T
Q  105 acaatataatataataagtcattaatcattttttgtctcagcttcaattccaaacaaaaccaatggcaacttgtttaacaggctattgcaggtaaaaaag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45320606 acaatataatataataagtcattaatcattttttgtctcagcttcaattccaaacaaaaccaatggcaacttgtttgacaggctattgcaggtaaaaaag 45320507  T
Q  205 cacatttcccatggtgggaaggttttataccttcccatgtgaacagccacc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45320506 cacatttcccatggtgggaaggttttataccttcccatgtgaacagccacc 45320456  T

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Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 41466457 - 41466213
Alignment:
Q  15 gagaagaatggagtggagctgc----taccgtgttttgtgtgtttggattttgtggtgtgaatagttattttttaagaatgggaggtgtggttcacaata 110  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||||||    
T  41466457 gagaagaatggagtggagctgcctgctaccgtgttttgtgtgtttggattttgtggtgtggatagttatttttaaaaaatgggaggtgtagttcacaata 41466358  T
Q  111 taatataataagtcattaatcattttttgtctcagcttcaattccaaacaaaaccaatggcaacttgtttaacaggctattgcaggtaaaaaagcacatt 210  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||| ||    
T  41466357 taatataataagttattaatcattttttgtctcagctgcaattccaaacaaaaccaatggcaacctgtttgactggctattgcaggtaaaaaaccacctt 41466258  T
Q  211 tcccatggtgggaaggttttataccttcccatgtgaacagccacc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41466257 tcccatggtgggaaggttttataccttcccatgtgaacagccacc 41466213  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 41465282 - 41465236
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaacagccacc 255  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  41465282 tttcccatggtgggaaggttttacaccttcccatgtgaaaagccacc 41465236  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 35972602 - 35972642
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaaca 249  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  35972602 tttcccatggtgggaaagctttataccttcccatgtgaaca 35972642  T

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Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 12138971 - 12139158
Alignment:
Q  38 accgtgttttgtgtgtttggattttgtggtgtgaatagttattttttaagaatggg-aggtgtggttcacaatataatataataagtcattaatcatttt 136  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  12138971 accgtgttttttgtgtgtggattttgtggtgtggatagttattttttaagaatggggaggtgtagttcacaatataatataataagtcattaatcatttt 12139070  T
Q  137 ttgtctcagcttcaattccaaacaaaaccaatggcaacttgtttaacaggctattgcaggtaaaaaagcacatttcccatggtgggaa 224  Q
    |||||||| || |||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||| ||||||||||||||||    
T  12139071 ttgtctcaactgcaattccaaacaaaaccaatggcaacctgtttgactggctattgcaggtaaaaaatcacctttcccatggtgggaa 12139158  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 31235166 - 31235206
Alignment:
Q  215 atggtgggaaggttttataccttcccatgtgaacagccacc 255  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31235166 atggtgggaaggttttataccttcccatgtgaacagccacc 31235206  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 41236838 - 41236797
Alignment:
Q  206 acatttcccatggtgggaaggttttataccttcccatgtgaa 247  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  41236838 acatttcccatggtgggaaggttttacaccttcccatgtgaa 41236797  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 31234158 - 31234124
Alignment:
Q  213 ccatggtgggaaggttttataccttcccatgtgaa 247  Q
    |||||||||||||||||||||||||||||| ||||    
T  31234158 ccatggtgggaaggttttataccttcccatatgaa 31234124  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 26521004 - 26520892
Alignment:
Q  116 taataagtc-attaatcatttttt-gtctcagcttcaattccaaacaaaaccaatggcaacttgtttaacaggctattgcaggtaaaaaagcacatttcc 213  Q
    ||||||||| |||||||||||||| ||||||  | |||||||||||||||||||||||||| ||||| ||  |||||||||||||||||| |||||||||    
T  26521004 taataagtccattaatcatttttttgtctcaagtgcaattccaaacaaaaccaatggcaacctgtttgacttgctattgcaggtaaaaaaccacatttcc 26520905  T
Q  214 catggtgggaagg 226  Q
    |||||||||||||    
T  26520904 catggtgggaagg 26520892  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 2320220 - 2320255
Alignment:
Q  212 cccatggtgggaaggttttataccttcccatgtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||    
T  2320220 cccatggtgggaaggttttataccttcccatgtgaa 2320255  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 247
Target Start/End: Original strand, 34826626 - 34826758
Alignment:
Q  116 taataagtcattaatcatttt-ttgtctcagcttcaattccaaacaaaaccaatggcaacttgtttaacaggctattgcaggtaaaaaagcacatttccc 214  Q
    ||||||||||||||||||||| ||||||||  | ||||||||||||||||||||| |||| ||||||||  |||||||||||||||||| ||||||||||    
T  34826626 taataagtcattaatcatttttttgtctcaagtgcaattccaaacaaaaccaatgacaacctgtttaacttgctattgcaggtaaaaaaccacatttccc 34826725  T
Q  215 atggtgggaaggttttataccttcccatgtgaa 247  Q
    || |||| ||||  ||   ||||||||||||||    
T  34826726 atagtggaaagggattgccccttcccatgtgaa 34826758  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 34873011 - 34872965
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaacagccacc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34873011 tttcccatggtgggaaggttttataccttcccatgtgaacagccacc 34872965  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 37242996 - 37243042
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaacagccacc 255  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  37242996 tttcccatggtgggaaggttttataccttcccatgtgaacaaccacc 37243042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 1259708 - 1259754
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaacagccacc 255  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||    
T  1259708 tttctcatggtgggaaggttttataccttcccatgtgaacaaccacc 1259754  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 1258707 - 1258673
Alignment:
Q  213 ccatggtgggaaggttttataccttcccatgtgaa 247  Q
    |||||||||||||||||||||||||||||||||||    
T  1258707 ccatggtgggaaggttttataccttcccatgtgaa 1258673  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 34873693 - 34873727
Alignment:
Q  213 ccatggtgggaaggttttataccttcccatgtgaa 247  Q
    |||||||||||||||||||||||||||||||||||    
T  34873693 ccatggtgggaaggttttataccttcccatgtgaa 34873727  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 44445536 - 44445498
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaa 247  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  44445536 tttcccatggtgggaaggttttatatcttcccatgtgaa 44445498  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 41638526 - 41638479
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaacagccaccc 256  Q
    ||||||||| ||||||||||||| |||||||||||||||  |||||||    
T  41638526 tttcccatgatgggaaggttttacaccttcccatgtgaaatgccaccc 41638479  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 3135969 - 3135931
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaa 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3135969 tttcccatggtgggaaggttttataccttcccatgtgaa 3135931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 27645876 - 27645843
Alignment:
Q  214 catggtgggaaggttttataccttcccatgtgaa 247  Q
    |||||||||||||||||| |||||||||||||||    
T  27645876 catggtgggaaggttttacaccttcccatgtgaa 27645843  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 16984372 - 16984326
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaacagccacc 255  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||||    
T  16984372 tttcccatggggggaaggtttcataccttcccatgtgagcagccacc 16984326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 29059388 - 29059268
Alignment:
Q  60 tttgtggtgtgaatagttattttttaagaatgggaggtgtggttcacaatataatataataagtca-ttaatcattttttgtctcagcttcaattccaaa 158  Q
    ||||||||||| |||||  |||||| | |||||||||||| ||||||||| || |||||||||| | ||||| |||||||| || |  |  ||| |||||    
T  29059388 tttgtggtgtggatagtacttttttta-aatgggaggtgtagttcacaatttagtataataagttatttaatgattttttggctgaagtgaaataccaaa 29059290  T
Q  159 caaaaccaatggcaacttgttt 180  Q
    ||||||||||| |||| |||||    
T  29059289 caaaaccaatgtcaacatgttt 29059268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 52720643 - 52720605
Alignment:
Q  209 tttcccatggtgggaaggttttataccttcccatgtgaa 247  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  52720643 tttcctatggtgggaatgttttataccttcccatgtgaa 52720605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 18246220 - 18246185
Alignment:
Q  212 cccatggtgggaaggttttataccttcccatgtgaa 247  Q
    ||||||||||||| ||||||||||||||||||||||    
T  18246220 cccatggtgggaaagttttataccttcccatgtgaa 18246185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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