View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9263_low_29 (Length: 312)
Name: NF9263_low_29
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_29 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 41388726 - 41388433
Alignment:
| Q |
1 |
accaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388726 |
accaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagca |
41388627 |
T |
|
| Q |
101 |
ataccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388626 |
ataccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtct |
41388527 |
T |
|
| Q |
201 |
cgtgaattccaacagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgatgatctgtcc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
41388526 |
cgtgaattccaacagcttccattccaaccatggaaggctggaaaagaacctcaggacaacggaaacgctcagcaccaatagtgattatctgtcc |
41388433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1261892 - 1262155
Alignment:
| Q |
1 |
accaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagca |
100 |
Q |
| |
|
|||||||||||||||||| || ||||| || || |||||||||||||| |||||||| ||||| || | || | |||||||||||||| | ||||||| |
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| T |
1261892 |
accaatccagacactgtacttcctctcaggaggtgcaaccaccttgattttcatgctacttggagcaagagcactgatttccttgctcatacggtcagca |
1261991 |
T |
|
| Q |
101 |
ataccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtct |
200 |
Q |
| |
|
|| ||||| ||||| |||| ||| |||||||| ||||| |||||||| || ||||| || ||||||||||||||||||||||| ||||||||||| || | |
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| T |
1261992 |
attccaggaaacatggtagaacctccactaagcacaatatttccatatagatccttcctaatatcaacatcacacttcatgatggagttgtatgtagttt |
1262091 |
T |
|
| Q |
201 |
cgtgaattccaacagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaa |
264 |
Q |
| |
|
| || |||||| ||||||||| |||| | ||||||||||| || || ||||| |||||||| |
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|
| T |
1262092 |
catggattccagtagcttccataccaattagagaaggctggaagagtacttcggggcaacggaa |
1262155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 43646914 - 43647197
Alignment:
| Q |
2 |
ccaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagcaa |
101 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| || |||| || || || ||||||||||| | |||||||| |
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|
| T |
43646914 |
ccaatccagacactgtactttctctctggtggagccacaaccttaatcttcatgctgctaggagccagggcagtgatctccttgctcatacggtcagcaa |
43647013 |
T |
|
| Q |
102 |
taccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtctc |
201 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||| |
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| T |
43647014 |
taccagggaacatagttgaaccaccactaagaacaatgttgccgtacagatcctttctgatatccacatcacacttcatgatagagttgtaggtggtctc |
43647113 |
T |
|
| Q |
202 |
gtgaattccaacagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgat |
285 |
Q |
| |
|
|||||||||| ||||||||||||| | ||| || || |||||||| || || || |||||||| | |||||| ||||| ||||| |
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| T |
43647114 |
gtgaattccagcagcttccattccgatcattgatggttggaaaaggacttctgggcaacggaacctctcagctccaattgtgat |
43647197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 8690143 - 8689878
Alignment:
| Q |
5 |
atccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagcaatac |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| |||||||| | |
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|
| T |
8690143 |
atccagacactgtattttctctcaggtggtgcaaccaccttgatcttcatgctacttggggccaaagcagaaatttccttgctcattctatcagcaatgc |
8690044 |
T |
|
| Q |
105 |
cagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtctcgtg |
204 |
Q |
| |
|
| |||||||| ||||| || || ||| |||||||| || |||| ||| || |||||||||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
8690043 |
ctgggaacatggtagttcctcctgaaagcacaatgttaccgtacaagtctttcctgatatcaacatcgcacttcatgatggagttgtatgtggtctcgtg |
8689944 |
T |
|
| Q |
205 |
aattccaacagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctc |
270 |
Q |
| |
|
||| || | ||||||||||| | ||| || || ||||| || ||||| ||||| | ||||||||| |
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|
| T |
8689943 |
aatgcctgctgcttccattcctatcatagatggttggaacaggacctctggacatctgaaacgctc |
8689878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 37050228 - 37050469
Alignment:
| Q |
2 |
ccaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagcaa |
101 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| || || |||||||| |||||||| || || ||||| || ||||| |||||||||||||| ||||||| |
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| T |
37050228 |
ccaatccagacactgtacttcctctctggtggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaa |
37050327 |
T |
|
| Q |
102 |
taccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtctc |
201 |
Q |
| |
|
||||||||||||| || | ||||||||| | || ||||| ||||| || ||||| || || |||||||||||||||||||| ||||| |||| ||||| |
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|
| T |
37050328 |
taccagggaacattgttgaaccaccactcaacacgatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctc |
37050427 |
T |
|
| Q |
202 |
gtgaattccaacagcttccattccaaccatggaaggctggaa |
243 |
Q |
| |
|
|| || ||| || |||||| || | |||||| |||||||| |
|
|
| T |
37050428 |
atggataccaggagattccatccctatcatggatggctggaa |
37050469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 68761 - 68469
Alignment:
| Q |
2 |
ccaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagcaa |
101 |
Q |
| |
|
|||||||||||||| || || ||||| ||||| ||||||||||| || |||||||| ||||| ||||| || || || ||||||||||| || ||||||| |
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|
| T |
68761 |
ccaatccagacactatacttcctctctggtggtgcaaccaccttaattttcatgctacttggtgccaatgctgtgatctccttgctcatcctatcagcaa |
68662 |
T |
|
| Q |
102 |
taccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtctc |
201 |
Q |
| |
|
| || ||||||||||| ||||||||||| | || ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||| || || |
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|
| T |
68661 |
tgccggggaacatagtcgtaccaccactcaatacgatgtttccatagagatcctttctaatatcaacatcacacttcatgattgaattgtatgttgtttc |
68562 |
T |
|
| Q |
202 |
gtgaattccaacagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgatgatctgtcc |
294 |
Q |
| |
|
|| || ||| ||||||||| |||| |||||| |||||||| || || || |||||||||||||| || ||||| || ||||| | |||||| |
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|
| T |
68561 |
atgtataccaggagcttccataccaatcatggatggctggaagagtacttcaggacaacggaaacgttcggcacctattgtgatcacctgtcc |
68469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 59046 - 59332
Alignment:
| Q |
1 |
accaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagca |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| || || || |||||||||||||||||||| ||||| || || || | ||| |||||||||||||| |||||| |
|
|
| T |
59046 |
accaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagca |
59145 |
T |
|
| Q |
101 |
ataccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtct |
200 |
Q |
| |
|
|| ||||| ||||| || ||||| || ||||||||||| ||||||||||| || ||||| ||||||||||| ||||| || |||||||| || |||| |
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|
| T |
59146 |
atgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtct |
59245 |
T |
|
| Q |
201 |
cgtgaattccaacagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgatga |
287 |
Q |
| |
|
| |||||||| ||||||||||||| |||||||| || ||| | | ||||| ||||| | ||||||||||| ||||||||||||| |
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|
| T |
59246 |
catgaattcctgcagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatga |
59332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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